K09943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09943

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09943

Determination of introduced cDNA(s)

  • J023009A08 - Rice Full-length cDNAs - Original: J023009A08

    full reading [+] show sequence

    Nucleotide sequence: J023009A08 - full reading 
    GTTTCCTCAT GGCCTCTCCC TCCCTCCTAA CCCGTTTCCT TCCAGATAAG 
    GCTATATAAA TACCCATCAT CTCCTTCCTC TCTTCCTCGC TCTCCCCACC 
    CCTCTCGGCC TCTCCTCGGT GGTCGACGGC TTCACCGGAC CGGACCGGAC 
    CACCGCTCGC CGCCGGGCAC GCCCGCGCCG CGGTCTGTAT GTCAAAGGGT 
    ACAGAAACAA TCAATATTCT GATATAGTTG CTGGGAATTT CAATCCCTAA 
    ATTCAAAATG ACCCCGGTGG TTCATTGCTC TGTTGGCAAT ATCAGCCTGT 
    TCCACATCGG CAGTTTCAGG CCAAGCCATG AAATCCAAAT AAGGAGGTTC 
    CGCAGCACAG AGAGGTATTC AAGAGTACCT TCACGTAGGC TGCTGCAACC 
    GCAACGAGCA TTCAACTTGA TCAGTATTTA CAAGAGAAGC AGCTGGTCCT 
    CTGCCCGCAG GCCAAGAACT CTGTCAGCAG CAACTGTTGG GACTGATGTT 
    ACTGTAGAGG ATCCGAATCC ACCACCTTCC GGAGAAACTT CTGAAGAAAG 
    CTCTGAGGAT ACAGCACCTG ACACTGCTGA AGCAAGTGAG CAAGCTGAGG 
    CAAGCACTTC TTCCATTCCC AAAGCAGGAC GAAACATAAG AAAGAGTGAG 
    ATGCCACCAC TGAATGATGA GGATCTAGTT CCTGGTGCAT CTTTTACCGG 
    GAAGGTTAGG TCTATCAAAC CATTTGGTGT ATTTGTTGAT ATTGGAGCAT 
    TCACTGAAGG CCTTGTTCAT ATCTCTCGAG TAAGTGATGG ATTTGTAAAA 
    GATATATCTT CCCTCTTCAC TGTCGGGCAA GAGGAGTCAG TGAGATTAGT 
    GGAAGCAAAT AAAGAGACAG GGCGCATCTC ATTGACAATG CGAACAGGTG 
    GTGATTATGT CAAGCCTAAA ACAGAAACAC CTAAGGCTGC AAGTGGCGGG 
    AGGAATACCA CTGCAACCAC GTCCAGAGGC TCGCCAAGGC AAACGAGGGA 
    AAGAGATGAA GCCAAGAGCA TGGGCGAAAC AAACTATGTG CAAGGACAAT 
    TTCTGGATGG CGTTGTGAAA AATTCAACAA GAGCAGGGTC ATTTGTGACC 
    CTACCTGATG GAAGCGAAGG ATTCCTTCCC AGAGAAGAGG AGGCAGTGGC 
    ATTGTTCACC CTTATCGGAC ATTCTGCACT GGAAGTTGGT CAACAGGTAA 
    GGGTGAAAGT ATTGAACGTA GTACGAGGCC AGGTCACGTT GACAATGAAG 
    GAGGGAGAAG ATGATGAAGA GGATCTGGCT TCATTAAACA CACAGCTGAA 
    GCAGGGTTGG TCCAGAGGGA CCAATGCATT TGAGCTAGCT TTCCGTAGGA 
    ATAAGGAAAT CTCTGCATTT TTGGATCAGA GGGAAAAGAT AATAGTTCCA 
    GATGTACAAG AAGCTGCTGT TGCATCAGTA GGTACTGAAC TTGATGCAGA 
    AGTAGGAATT GAGCAAAGTC CAGGCAAGGA ACCTGAGACA GGCAATGCTG 
    AATCAGTTGC AATCGATAGT TCTATAACGG AGGTCAAGGA GACTGATAGT 
    ATAGCTGCAG TGGAGAAGGA TAGCGAAATT AGCAAGACTG AATCAGTTGA 
    GACTGCTAGT TCAGTTGTAA TTTCTGAAGA TGATAGCACA GTTGATGGCA 
    AACTCGTTGA ACCAACTGCT TCAGTTTCTG CAACTGAAAC TGAGATTAAA 
    GAAGATAGCT CTGAGGGATC TGTCACCACT GAGCCTACAG AAGCTGCTTC 
    AACAGAATTT GTCACCGCAG TCGTTGAGGA AAGCGCTCCG ACTGCTAGTT 
    CAGTTGAAAC TTCTGAAGAT GATAGCACAG TTGATGACAA ACTCGTTGAG 
    CCTACTGCTT CAGTTTCTGC AACTGAAGCT GAGAGCAAAG AAGATAGCTC 
    TGAGGGATCT GTTGCTTCAA CAGAATCTGT CACCGCAGTC GTTGAGGAAA 
    GCGCTCCTGT GTCATCAGTA GCAATTGAAG TTCCTGCTCC TGAAGCATCA 
    GAGGCCTCCG CTCAGGAGAT AATTGAGGAT TCTACTACTG TGGAAGGTGC 
    CGCCGATGAT CAAACTGTAG AATCTGATAG TCCACCTCCA GAAGGTGTTG 
    AGCTGTCCTC GAATGGGGCT CCAGACAGCT CTATTGCTGA GGATAAGCCT 
    GATGAACCAG AAGAATCGTT GATAGTAGAA GAGGTTCCAG TAACTGCAAG 
    TAGTGAGTCT GAGGATAAAG AACCTGCTGC GGTACCTGAA GAAGTAGCAG 
    CCTCAAGTGA GAAAACTGCA GATGTTGCTG TTGCAGGAGC TGAAGCAAGC 
    ACGGCCACAG GTCAGCAGTA ATTTCGTCAA CCAGATCTTA CGGGCCTGAC 
    GTGTAGTAAT TTCATGAGCC ATATTCTGTC TGCAAAAGGC TTTTCGAGCA 
    ACTCTACCTA ACTAGGAACA GAATGTTAGG ATTAGTTGCA TGTAAAACAT 
    TCAAGTGACT GCTTTTTCCA GTTGTTTACA TTTTTTTTCT TGTATTAAAT 
    TTCTTCATTA ATGTTCTGTG GTTTAATATG ATGGTCAAAG GATCAATCGA 
    TGCC

    Gene models with high sequence identity

    1. AT4G29060.2 [+] show detail - elongation factor Ts family protein
      E-value: 3e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleic acid-binding, OB-fold-like 4.1e-22
    superfamily Nucleic acid-binding, OB-fold-like 1.3e-09
    HMMPanther TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PR 5.1e-18
    ProfileScan Ribosomal protein S1, RNA binding domain 20.899
    ProfileScan Ribosomal protein S1, RNA binding domain 15.049
    Gene3D Nucleic acid-binding, OB-fold 1.5e-16
    Gene3D Nucleic acid-binding, OB-fold 1.7e-06
    HMMSmart no description 4.8e-21
    HMMSmart no description 2.1e-08
    HMMPfam Ribosomal protein S1, RNA binding domain 4.7e-16
    HMMPfam Ribosomal protein S1, RNA binding domain 7.3e-05

    See the detailed result >

    AT4G29060.2

    Model type
    Protein coding
    Short Description
    elongation factor Ts family protein
    Computational Description
    embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR