K10141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10141

Determination of introduced cDNA(s)

  • J033071E20 - Rice Full-length cDNAs - Original: J033071E20

    full reading [+] show sequence

    Nucleotide sequence: J033071E20 - full reading 
    GTGGTCCTTC CTTCCTCCCC TACCTCCCCT TTGCGCTTGA CATCGCCGGG 
    TGGATCAGCG GCGGAGGCTG CCAGCGATGT CGTCCCTCAA CTCGCTCTTC 
    AACCGCTCCA CCTTCGGTAC CAAATGCAAA ACATGCTTGA ATTTAGTCAT 
    TTCGAGGATC AAGCTGCTGC GCAACAGGAG GGAGTTGCAG CTAATAAATA 
    TGCGCAAAGA GATGGTTCAG TATCTTCAGA CAGGCCAGGA ATCGATAGCA 
    AGGATTCGGG TGGAGCACAT TATTCGAGAG CAAAATATAT TGGCTGCATA 
    TGAGATTGTT GAGCTTTTCT GCGAATTTGT GCTGGCAAGG GTCCCTATTG 
    TTGAGGTCCA AAAGGAATGC CCCTTCGAAC TACGGGAAGC AATAGCTAGT 
    ATAATATTTG CATCAGGGAG ATGTTCAGAC TTGCCTGAGC TAATGCATCT 
    CCGTACTTTG TTCACCACCA AATATGGCAA GGAATTTGTT GCTGCAGCTA 
    TGGAATTGCG TCCTGACAGC GGTGTTAATC GTACAATAAT CGAGAAGCTC 
    TCAGTGAAGG CCCCATCAGC TGAATCAAAG CTGAAGGTTC TGAAAGCTAT 
    TGCTCAAGAG TATGGCCTTG AATGGGACTC ATCGAATACT GAAGCAGAGC 
    TTAACAAGAA ATACGAAGAT CTGCTGGATG GATCAGGATC CTCAGCACGC 
    CAGGGCCAGT TACCTATAAT CGAGAACTCT CCAGTTGCTT CCATTTCCAG 
    AGATATGCCA TCGTTGTCCA TTTCACCTGT CGAGGACACT GGAAAATATC 
    AAGCTGCTCC CCAGTCCCCA AGCTCACCTG CTGGGTCTGC AGTAATGCAT 
    GCGGCTACCA AGAGTAACAT GGTGAGCCAG GAGCATCATC GCTCCCCTGC 
    TGATGAGATA TCGTGCGCAA CCCCAAGTTC GTCGGACGTT CTTGAAAAAG 
    CCCGAGCTGC CATTGCTGCA GCCAACCGCG CCTCCGCCGC TGCCCGTGCA 
    GCCGCGGACC TTGTAAAGGT CAAAATTACA AGCTAGTGAC GCACTGACGC 
    CTGCTGTTGT GGCGAACCAA GGCAAGTTGC GTGGTTTGAG ATTGTGGCAA 
    CTCGGGTTTA TTACTGACTA TACACATGCT TAATTTGAAT GACAAAGTGT 
    GGCTTAAACA AACGAGAAAG TGTATTACTG TATACCACTC TCTTGGCATT 
    TCAACTGAGT TAGTGTGGCT TTTTGCCTTT CTGTTC

    Gene models with high sequence identity

    1. AT1G25420.1 [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
      E-value: 7e-78; Score: 288.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF292, eukaryotic 3.2e-63
    HMMPanther MJK13.15 PROTEIN 1.1e-89
    HMMPanther UNCHARACTERIZED DUF292 1.1e-89

    See the detailed result >

    AT1G25420.1

    Model type
    Protein coding
    Short Description
    Regulator of Vps4 activity in the MVB pathway protein
    Computational Description
    Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G34220.2); Has 638 Blast hits to 625 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 157; Plants - 289; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR