K10143

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10143

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10143

Determination of introduced cDNA(s)

  • J023040F09 - Rice Full-length cDNAs - Original: J023040F09

    full reading [+] show sequence

    Nucleotide sequence: J023040F09 - full reading 
    GAGAGGGCTC GCCACCTCGC CGCAAGCTGC GGCCGCCGTC GCCGCCGGGG 
    TCGGCGGCGC AGCCGAGCCT CGACTGCCTC CCGTCGGAGA TCCTGGAGAA 
    CATCGTCGCC CGCCTCGGCA TCCGTGAGGC CGTCCGCACC TCGGCGGTCT 
    CCGGCGCATG GCGCCGCCGC TGGGAGACCT CCCCGGGGCT CAGCTTCGAA 
    TGGGACCGCG GCGAGGTTGA CCCCGCCATC GTCGCCACCG TCCTCGCGCG 
    GTACTCGCGC CCCGTCGCCT CCTTCCGCTC CGGGTGGGTC GAGAGGGAGC 
    ACTCCGCCGT CACGGATGAG TGGCTCGTCC TCCTCGCCGG AAGGAGCGTC 
    GAGTCCCTCA CCCTTGGCTT CGCGGAGTTC GACGATAGGC GGTTCCACAC 
    CATCCACTCC GCCATGTTCT CCTGCCGCGA GCTCACCGAG CTTTACCTCG 
    AGAACTGCCG CCTCCCGGCC GCACCCTCGG GCTTCTTAGG TTTCCCAAAT 
    CTAACCACGC TAAGTCTCTC ACCATGGTTA ATCTTCCAGA GCATGGGGAG 
    AGTACCTTGG AGGCGATGAT CTCCTTGTCT CTGTTGCTTG AGTGGCTGGA 
    TCTTAGGAGT GTTTGTACTG ATGGCAACCA GATGGATGAG TGGGTGATTC 
    GGGCGCCGAA TCTCAAGCAT TTGACTATTG AATCAGATTA CGATTATTTA 
    TGGAGGGTAG AGGAGCTCCC TTCTCTCCAG ACGGCAACTG TCAAGGTTGA 
    TGATGATTCT ACTGATCGTG ATTTTGTTCA GTTACTCACA TGTTTTGCCC 
    AAGTCAGCAT GCTTGAGCTT CATTTGCTGG CAACTGAGGA TAATGCTCTA 
    GATGGACTTT CATGTTCTTT GGAGAAACTG AAGAGCTTAA CACTTCATGC 
    AAACTTCCGC AGTGTGTCTA GCATTTTATG TATATTTTCT TTACTCATGA 
    GGTGCCCCAA CATTGGAGTT CTGGACATTG AGATTATGGG AAGTGAGTTT 
    CCTCAGAATG ATGAGATAGA TGCAGAATTT TTCAATACAC TGGAAACCAA 
    TGATCTGTTC ACTAATCTAG ATGACATAAC CTTGAGGAAT GCCCCATGCT 
    TGTCAAATGA TATGCACTTT ATTGAGTTTG TTCTGTCAAG AGTAAGGCTA 
    CTTAGTAAAT TTTGGGTTTT TCGAGATGAT AGTAATTCAT TGTCAAAGCC 
    TAGTGAAGAA GCAGTTATTG AGATAGCAAA ATATAGAAGA GCTTCACCAA 
    AATCCAGAGT CTTCTTTAGG AGCATGGAAG ATTATTACAT TTGAGTGACG 
    AGCACTATTG ATGTGGATCT AGATAACATC TTTTACATGG ACCGTGGTCA 
    AGTACACTTT CCATATTACT TTCTGAGAGC CGCTGGGAAA CCACAGCTTA 
    ATTGTTAAGT GTTCATTACT GGACATAAAT CCGGTAATAT TAGTTGTGGG 
    TGTCAAATTT GCATAAAGTC TTGTAATACC AATCTTCCTG GAAGATCAAA 
    CAATGTTTAC AGTAATTTTC GAGTGATTAT CCTAACACCA AATAGTTTTC 
    AAG

    Gene models with high sequence identity

    1. AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 2e-20; Score: 43.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam F-box domain, cyclin-like 8.2e-06
    superfamily F-box domain, Skp2-like 1.6e-07
    superfamily RNI-like 6.1e-07

    See the detailed result >

    AT1G13570.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR