K10450

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10450

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10450

Determination of introduced cDNA(s)

  • J033128G16 - Rice Full-length cDNAs - Original: J033128G16

    full reading [+] show sequence

    Nucleotide sequence: J033128G16 - full reading 
    GTGCTTTCCG CGCTGCTGCT GACCGACGAC GGCCGCGCCC CTGTCCCGGT 
    CTCCTCCTCG TCCCTCCTCC CCGCCTCTCC ACTCTTCCAG AACATCGCCA 
    CCGCCACCGC CGCCGCCGCC GCCGCTCGCC GGCCACGACC GCCCCCGGCC 
    CATCTACACC TCCGCCGGAT CTCGCAGCCG CGCTCCCCCC ATTGGAGGGA 
    GATCCGTTCC AGCGCGTGGG ATTTAATTTC AACACATGAC TGGTGAAATG 
    TTTGCTTGAT GATGTCCGGA CATGATTTCA GTATTGTTCA TAATGCAGTT 
    GGCATCTCAT GCCACTCAAG CAGATGAAGC AACAGAGCTT GCTTCCAGCT 
    GTGATTGTGC AGAAGTGCCA GCTTCACAGC AGATAGTTTC TGAATCAAGT 
    ACAGCAGGAA GCTCCACAGA GCATCTAGTT TCATGTGAAA TCAAGCCACT 
    GGGTGTTGAT GAAGACATTG AAACTATTGA TGCTAACGAA GAAACCCACC 
    TTGTCATTCA AGACTGTCCA CAATGCCGGA TTTGCCTTGA TAATGAAGGT 
    GATGACTTGA TTGCACCTTG TCATTGCAAG GGCACACAGA AATACGTGCA 
    TCGATCCTGT CTTGATAACT GGAGATCAAC AAAGGAAGGT TTTGCCTTTT 
    CACATTGCAC TGAGTGTCGG GCTGCCTTCT TACTTCGTGC AAATGTTCCT 
    CCAGATCGAT GGTGGTTGAG ATTGAAGTTT CAACTTCTGG TTGTTAGAGA 
    TCACACGTTG ATTTTTTTTA TTGTACAACT GGTTGTTGCT TTATTGGGTA 
    TGCTAGTATA CAGATTTTAT GGAGATGAAC TACGAGAAAT GTTTGGTTAT 
    GAAGAGCATC CATATGCTTT TTATGCAATG GCAATATTGG CTATTGTTTT 
    GGTTGGTTTG CTGTATGGAT TCTTCATAGC TATAATATGT GGGCAGAGGA 
    TCACAGAACG GCATTACCAT GTTCTTGCAA AGCAAGAGTT AACCAAGGAG 
    TATATTGTAG AGGATCTTGA AGGAACTGAT GGAGTTCCTG ACCTTGATCC 
    TAATCATGTT ACAGAGCTGA GGATTCTGGG GCTATATTGA GTACTGGAGA 
    TATCATCAAT TCATCAGCTA AATGTCGATG CTAAAATGGT CATATGGGAA 
    AAGCTCTGTT TAGATACAAA TCCATAAGGC TGATGCTGCA CGGACATCAT 
    CCAGAACTTC AGCACAAGGC ATGACAAACG GGCTTATCTG CGTTTTGGAA 
    GACATGTTTG TCTGAAGGCA TCCAATAGAG TTTAGAGCTA TTTCCCTTTT 
    TTCCCCATGT AGGATAAATT GCTCTCACAC AAAAAGGAGA ATAAGGTGAG 
    TCCCCTCAGA CTCTGAATCG ATGATGAGGA TTATGATAGA AATGTTAGGA 
    TGCCATTTCG AATGGACATT TTATTAGATA TTACTTGTCT CTTCATGTTC 
    ACAATAAACA TGAATAGTTA TAAGAAAATG AGGTAAATAG AGACGTATGC 
    AAGCTTTGCT TTTCTGCCTT C

    Gene models with high sequence identity

    1. AT1G50440.3 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 6e-93; Score: 338.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-CH-type 1.9e-16
    Gene3D no description 6.2e-12
    ProfileScan Zinc finger, RING-CH-type 20.137
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 3.1e-11
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 3.1e-11
    HMMPfam Zinc finger, C3HC4 RING-type 3.8e-07

    See the detailed result >

    AT1G50440.3

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G11020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR