K10607

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10607

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10607

Determination of introduced cDNA(s)

  • J033040E14 - Rice Full-length cDNAs - Original: J033040E14

    full reading [+] show sequence

    Nucleotide sequence: J033040E14 - full reading 
    GCCGCCTCCT TCCATCCCCT CCCCTCCCCT CCCACGCGAC GGCGGCGGCG 
    GCGGCGGCCG GAGCGCGCGC CTCCTTCCCA CCACCGGGCT CCATCTCGCC 
    TCGAATCGAA GGGTAGTAGT AGTAGTAGAG GATACACGAT GCAGTCTCTG 
    CTGCGGCGCG TCTATCTTGC CGGAAGCCAT GGCTCCGCGG CGAAGCTCTT 
    GGACCGTGCA GCTTCTGGAG TCGCGCAGTC GGGTGCTAAC CTGCTGTCCA 
    TCAAGCACCT GAGTTCTTGC AGCTGGATTC GTCCATTTGG GAACTCAATC 
    GTCTCCGGTG ATAGTGTTCA TTCCCATGGG TTCTGCGTGA ATACCATGCC 
    AATGAGGGGT CTATCAACAG TGGGGAGTGC TGAGGTTTCT GTCGAGGAGG 
    AAAGTTCTGA CTCTCCAGGA GTCGAGCATC CTCCGCGCAT CAAGTTTAAG 
    AGGCCTGACA AGACGGCCAG GCACATTATG AATATCTTGA ACAAGGAGGC 
    TGTTGACAAG GTCCGTGGGG AAAGAGAGAT TCCTGATGTG CAGCCTGGAT 
    GTATTATCCA AATGAGATTG CAAGTTCCTG AGAACAAGCG TCGTGAGTCT 
    ACGTTGAAAG GCATTGTCAT AGGAAGACGT AATGCTGGGA TCAATACAAC 
    TTTCAGACTG CGTAGATTAG TAGCTGGTGT TGGAGTCGAG TCTGTCTTTC 
    CACTTTACTC TCCAAACATC AAGGAAATCA AGGTCTTGGA CAGGAAGAAA 
    GTCAGGAGAG CAAAGTTGTA TTACCTGCGG GACAGGATGA ATGCACTTAA 
    GAAATGAGAC TGCTTTAGCT CCCCTTTTAT TTTTTTTTAG TTGATCTGCA 
    AGGTTTCTTG TGACATAAAG CTTTCAGTTC AGGATGCACA TTTTGTTAGT 
    TCCATCTCCT AAAAGCTACT GTTTGTATTT CTGATACTTG GTTCTTTCAA 
    GTACACAAGC AGTGCAGGCA GCAATCTGCT CCCGTGGTTC TGAATTGACA 
    GCGTTGATAT CTTATATTTT ATGTTGTAAC CTCTTTCTGA TGATAGAAAT 
    GACCACATAT CAAGCTCCCC GCATTAAAGA CTTGTTTGTG TTTAAGATAA 
    AAATAGTTTG AAGCTTAGTT CTTCAAAGC

    Gene models with high sequence identity

    1. AT5G11750.1 [+] show detail - Ribosomal protein L19 family protein
      E-value: 9e-50; Score: 194.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 50S RIBOSOMAL PROTEIN L19 1e-66
    HMMPanther Ribosomal protein L19 1e-66
    HMMTigr Ribosomal protein L19 2.8e-22
    FPrintScan Ribosomal protein L19 8.3e-08
    FPrintScan Ribosomal protein L19 8.3e-08
    HMMPfam Ribosomal protein L19 5.7e-31

    See the detailed result >

    AT5G11750.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L19 family protein
    Computational Description
    Ribosomal protein L19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L19 (InterPro:IPR001857); BEST Arabidopsis thaliana protein match is: Ribosomal protein L19 family protein (TAIR:AT4G11630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR