K10713

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10713

Determination of introduced cDNA(s)

J023140A17 - Rice Full-length cDNAs - Original: J023140A17

full reading [+] show sequence

GAGATTCCTC CATAGCTCAC AGAAACCTCA CAACCCTAGT TCGGCGAGAG 
CCGGAAGCTA TCAAGCTAAG CGAGATACGA AGGAAAGCGG TTCTTGCAGC 
AGAAATTTCA AGGCTTTGCC GCCAAATTTG GCCCAAGTTT GGCTCAAAAT 
CCACCATTGC AGGCCCCTGC CCCTCGGGAG GCTAAAGCGA GACGAAGGCC 
ATGTCGCGGC GGTCTGGGTA TCGCGCGGCG GAGCAGGAAG ACCGCCAGGT 
TGATCTGATG GGCGACTCCG ACTTCGACGA CGACGAGTAC GGACAACCTA 
TAGAGTCCAA AGAAGATACG TCGGCGGTGG ATGTGAAGAA AGGGAAGGAC 
ATACAAGGAA TTCCATGGGA TAATTTGAGC TTCTCAAGGG ACAGGTATAG 
GAAGACTAGG ATGGTACAGT ACGCGAACTT TGAGAATGTA CCCAACTCCG 
GGAAAAATTC AGAGAAGGTA TGCACACCTG TAGATAAAGG GGCACTCTAC 
TATGAGTTTC AGTACAACAC AAGATCGGTG AAACCGACAA TTCTTCATTT 
CCAGTTGAGA AATTTAGTAT GGGCAACTAC TAGACATGAT GTGTATCTTC 
TATCACAACG TTCTGTGCTT CATTGGTCAC CATTCGCCAG TGAGAAGCAC 
AAAGTCATTG ATCTTCAAGG ACATATCACG CCATCTGAGA AGCACCAGGG 
GAATGTCTCC GAGGGGTTTT ACCAGGCTCA AGTTAGTACA CTAGCAGTGA 
GAGGTAATTT GCTTGTTGCC GGTGGATTTC GTGGAGAACT AATTTGCAAG 
TTTTTGGATC GTGAAGGAAT AAGCTATTGT TGCAAGTCAA CACACGATGA 
CAATGGCATC ACTAATTCTC TGGAGATATT TGAGAAACCC AGTGGTTCGG 
TGCACTTCCT GGCTTCAAAC AATGATTGTG GAGTTCGAGA CTTTGACATG 
GAAAAATTTC AAATTTGCAA TAATTTCCGT TTTCCTTGGG CTGTTAATCA 
CACATCATTG AGCCCGGATG GTAAACTTGT TGCTATTGTT GGGGACAACC 
CTGAAGGACT TATAGTCGAT ACTAATTCAG GAAAAACAGT TCATGAACTC 
CGCGGTCATC TGGACTACTC TTTCGCGTCA GCGTGGAACC CAGATGGCCG 
GACATTCGCG ACTGGTAACC AAGACAAGAC ATGCAGGATC TGGGATATCC 
GAAACCTTTC CAAGTCCGTT GCTGTTCTGG GTGGCAATAT GGGAGCCGTA 
CGGTCGATTC GCTACACATC CGATGGGCGA TTCTTGGCAA TGGCGGAACC 
AGCAGATTTC GTTCATATAT TCGACGTCGG AAGCGGGTAC CGAAGGAAGC 
AGGTGGTGGA TTTCTTTGGT GAGATTTCTG GCATTTCGTT CAGTCCCGAC 
ACCGAGGCTC TGTTCATCGG TGTTCATGAT CGGACCTATA GCAGCCTCCT 
CCAGTACAAC CGGCTACGGT TCTACTCATA CCTTGATTCT GCTATCTGAA 
TTTGCTACTT GCAATCACTG GCAGAGTAAT GTGAGTTCTG AATCACAAAA 
AATTGTAGAA GCTAGTAAAG TAGTAGAGAA GATGTAGATA TGTCCATATC 
TGTAGCTGTT ACTGTAAAGG AACCTGAAAT GCATCTGCAA ATGGCCTGTT 
GCTTTTGCTG GACAAAACTG TATCCATCAG ACTTCAGGGT GAGCAATCAT 
CCTACGGAAG AGAAGATGTT ATCTGGTACG GCGCTGTCTA CTTCAGCAAA 
GGCTGAAAAA TATCTTGACC TAGTTTCTGC TGCCGCCGGT GGCCGGCCGG 
ACCGCCGTGT TGGACGACGT TGGCGGCGGC GGCGACCGTG TTGGGTCGAA 
ATGGGCCCCC ACAGAGCATA TGGGCTGGAC CGCCTCGTTG GGTTTACTAC 
AATTGAGAAA GAATTGGAAA AAGT

Gene models with high sequence identity

AT1G55680.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 4e-173; Score: 605.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	WD40 REPEAT PROTEIN	1.9e-15
Gene3D	WD40/YVTN repeat-like-containing domain	2.2e-29
HMMSmart	WD40 repeat	3.4e-08
HMMSmart	WD40 repeat	4.3
superfamily	WD40 repeat-like-containing domain	4.9e-36
HMMPfam	WD40 repeat, subgroup	2.8e-07
ProfileScan	WD40 repeat 2	13.884
ProfileScan	WD40-repeat-containing domain	16.164

See the detailed result >

AT1G55680.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G13340.2); Has 20114 Blast hits to 9589 proteins in 506 species: Archae - 80; Bacteria - 6727; Metazoa - 4776; Fungi - 4188; Plants - 1687; Viruses - 0; Other Eukaryotes - 2656 (source: NCBI BLink).
Link: InterPro Scan - TAIR