K11005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

UV signal::Others::positive

Original: K11005

Determination of introduced cDNA(s)

J033117H03 - Rice Full-length cDNAs - Original: J033117H03

full reading [+] show sequence

GGGTTTTCGC CATTTGTTCT CGCGGCGGAG GCCAGCAACG GCGGTGCGCG 
CGGCGGCGGA GGCTTGCCGC GCCGGCGGCG ACCCCTCCGA TTCCCTGGCG 
GCTCCTGGAC GGCGCGACCT TCGCCGCGAA TCGGTGGAAT GGAGACGCGG 
ATTGGTGGCT TGGCAAGTCG TAGCGGAGAT GGGATGCTGG AGCATGTGGA 
TTGGGGTTCC TGGGCGGAAT GCATAGCTGT GAATCTTGTG ATCTGCATTA 
ACTAGTGAAG GTGGCTAAAG GGAGAAAGGC ACGGTGACTT TTCTTCAGAA 
GCGCGTCCTG TCACCTGTGA CTTGATCCTT TCAAAGAAAG GGATTTCGAT 
TCTCTGAAGC AAGTCAGAGA AGCACGGCTT GGTAGTTTTG AGCTAATCTT 
GCTCATCCAT TCGAAGACAA CGTGCTACAG TAGATGCAAC TGCTACAGGT 
GCAGTAATGT TTGCTACAGG CAACTGATAC ATGATGGTGG CAAGTGTCAA 
GTGTGTGAAT TCTTGAAAAT TAAGGAAGAC CTGCCTGACT AAGGTGGCAT 
GTATCTATCA CCGCGTGCGA TTTCCAAGGT ACGCAAGTCT TCAGCTAATG 
GCAGTGCACA TCAATTCTAC TTTGCTGCTT CTAGACTAGC GCACATCAAT 
AGCATGCAAG ACTTTTCCAT GTTCAGTTTG ATCTTGCTGC GTGACGTAGC 
TGGTAGATTA GTGCTGATAA TAGTTCAAGC TCATCAGGAG ATGAGCTTGG 
TAAAGCTTGG AACCAGCTTT GGAACTGTAA TGTGCCCCCA AAAGTCAAGG 
TGTTTATGTG GAGAGCTGTC ACTAACAGTC TGGCAACTAT GGTGAATAAG 
AAGAAAAGGA ATCTAGAGCA AAACTCCTTG TGTACCATCT GTGGAACAGA 
GGAAGAGGAT GTTGCTCACG CTCTGTGTCG TTGTCCGCAT GCGAAGTACC 
TGTGGGAAGC CATGGGAAAC ACCAATGCCA TCTCCTGCAA ACCGGACAGC 
AACTGGAAAG ATTCTGACTG GATCCTTGAC ATTTGAGGGA GAGTTTCAAA 
GGAGGAGCGC ATGGGGCTCA TGATGCTGCT GTGGCGAATT TGGTATGTAC 
GTAATGGGAT TACTCATGGA AAGGCAGCAA TTCCGGTGGA GGTTTCCCAA 
CGTTTTATCA TCAGTTATAT GGCATCACTG TTGGAGATTC GACAACACCC 
GAATGCCAAT TTGATTAAAG GGAAACATGT GGTTCAATAT GGGTCGTCAA 
TGCCTTTGCC AAGACAATGC AAGCCAAGTG CAGAATCCAG CTCTTGGATA 
AGACCACAGG AAGGCTGGAT GAAGCTAAAT GTTGATGGCT CATATTACCC 
TAGTGATGGG AAGGGAGGAA CTGGCGCTGT TCTCAGGGAC AGCTCTGGGA 
ACCTAATTTT TGCGGCTTGT GGTGTTTTGC ACAGACCGGC AAGTGCTCTG 
GAAGCTGAGA TGGTAGATTG TAGGGAAGGG ATCAGCATGG CGCTACAATG 
GACGCTGCTG CCCATCATTG TGGAAACGGA CTGCTTGGAG ATGGTGCAAT 
TGATTCACTC TGATGAGAAG GCCATGTCCG ATTTGGCATT CCTGATCAGG 
GAAGTTAAGC TCCTTCTTAA AGGAAATAGG GAGATTGTCA TAAAAAAAGT 
TAGTCGTGGT CAAAGCAGAG ACTGTCATGT CTTAGCAAAT AAAGGTAGAT 
GTGAGTCCTT AACTGCCTTT TGGCCGGATG ATAATTGTAA CTTTATCCCG 
CACGTTTTGG GTGCGGATGA GTAATATATC TCCCTTTTCC CCGC

Gene models with high sequence identity

AT2G02650.1 [+] show detail - Ribonuclease H-like superfamily protein
E-value: 2e-20; Score: 98.20

InterPro Scan Digest

Program	Description	E-value
superfamily	Polynucleotidyl transferase, ribonuclease H fold	4.2e-18
HMMPanther	NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RE	9.2e-14
HMMPanther	RNA-directed DNA polymerase (reverse transcriptase), related	9.2e-14
HMMPanther	NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE-RE	9e-08
HMMPanther	RNA-directed DNA polymerase (reverse transcriptase), related	9e-08

See the detailed result >

AT2G02650.1

Model type: Protein coding
Short Description: Ribonuclease H-like superfamily protein
Computational Description: Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT3G09510.1); Has 1375 Blast hits to 1363 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 1371; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR