K11030

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11030

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11030

Determination of introduced cDNA(s)

  • J013156I11 - Rice Full-length cDNAs - Original: J013156I11

    full reading [+] show sequence

    Nucleotide sequence: J013156I11 - full reading 
    GAGAGCACCT GAACGGAAAT CTCCCCCATA TGGTCCGGTC CCGATCATCT 
    TTCTGAAGAC TGTAGGCGCT GCCGCTGACC CGGACGGCGC GGTCTCCGGC 
    GGTCGATTCG CCGCCACGCA ACGCAACCCT CCCTCCCTCC CTCCGCCGCC 
    GGTCAAACCT CCGCCCCGCC GCCCCCCACC CGAGCAGCGG CTCACGCACA 
    CACATCCTCC TCACCAACCC ACCCGCACCG CCGCTGACGC GTGGGCCCCC 
    GAGCCCACCT GCCAGCAGAG GCCGGTGGCG CCAACGATAT ACTAGTATAA 
    AATATATTCA GCTCGTCGGC GTCGTCGTTT ACCAGTCGCC TCGCCTCTCG 
    GCGTCCCGGT CGTCGGTCTC CGCTGCCTCT CTCTCTTCTC TCTTGCCCTA 
    CTCTACTACT ACTACCAGCA GCACACGGTT TCCGTGACCG GAGCGCGCAG 
    CAGCCGCCCA CCTAAAGGCT AAAGATCCGA TCAAATCGAA GAGACTTAAT 
    ACCTTCTTTT TTTTTCTTGA GAGGAATATT TTTTTTTCGC TTTACCATTT 
    CTTCGTCCCT GGGGGATTTT CGGGGGGATT CTGAGGAGCA AGAAGCATTC 
    GGCCGCGGCG GGGGTCCGGC GCTAAGCTCG AGAGATTCTT CTCCGTTTGG 
    ATTGCACTTG TCAGAGTAAA AGGGCTAAGG ACACTATGCT AATTTAAGAC 
    ATCTCATCCA AATGAGGCGC ACCACACTTC TTTGTTGGCA AACTGAAATC 
    AGATAGCATT CTGGTAGCCA CTAAACCTAC AGGGATGTTT CTTGTGTGTT 
    TTGAAGCCAT GTGCCCCTGT TTTGGTTCAA GAAGGAAGGA TGGGAGCGAA 
    GACCCTGTTC TTGGAAGGGA TGGAAATTCC TTGAATTCTT CTGAGCTGAG 
    GTCAATGTCT GATAGAGTTC CTCCAAGCCC TCTTCGAGTA CCTGCAAGTC 
    CATCTAGATT TTCATTGTCT TCATCACCAA GTAGAAATGA GCCATTGAAC 
    CTGAGTCTTG AACAAGTTAT TAAACTGACA CATAACTTTG CACCAGACCT 
    GATGATTGGT GAAGGTTATT TTGGAAAGGT CTACAGAGCA CAGCTGCGAG 
    ATGGCCACAT TGTGGCAATT AAAAGGGCAA AAATGGTAGG TTTTATTTTT 
    TATTTTTATT TTTTTAATAA AAAGCAGTGT TGGCGCAATG ATAGTGGCTG 
    TCAACAAGCA GCTATACTAG AGATTTCTCT ATTTAGAATG ACTGAGGTGT 
    TTTTTTTCAA GTAGTCTCGC TGGTTGATCC ATTTTTGTGT AGATCAGTAC 
    GGTAATGAAA CAGTAATGCA CTGGTAAAGC ATGTACTCAC ATTGCATTCT 
    TTGCACCAGT AGTTGTGGAT AGTTATTATA ATTTGGTGTT TTTCACCGCT 
    TGATCTTGTT GGTCACTAGT CAAATTTCTT TTGCAATTTA TATTTATTCA 
    AAAGGTCCTG ATAAAGTATT AAAGTTGCTG ATAGAAACTC TGCTTCCTAC 
    ATGTGATTTT TCTTACAAGT GAATCGCAGT TTTCATCCGG TTTCTTTATG 
    CAGGAACATT TTGCCTCTTT ACGGGCCGAA TTCAGTAATG AAATTGCATT 
    ACTAAAAAAA ATTGAACACA GGAATTTGGT CCAATTACTT GGTTATATCG 
    ACAAAAGAAA TGAACGAATC GTCATAACTG AGTATGTTCC AAACGGCACT 
    CTTAGGGAGC ATCTAGATGG TCAACGTGGG CTTGTTTTAA GCTTTAATCA 
    GCGGCTTGAA ATAGCTATAG ATGTTGCTCA TGGGTTAACT TATTTGCATC 
    TATATGCAGG TATGCTTTGT CACATGTTTC TGTTGCTGAG CATAAAAACA 
    GTTTAAAAAA ACAACTGACT GTTATTTTTA TTTTTATTTT TATACCAAGT 
    CATGCATCGG GGTATTGTCA CTAAGTAATG CAAGAACTGT AAACCAGTAT 
    TTTAACTATA TTTTCCCCCT CTAAAGGTTG GTCCATTGGC TCATAATCTG 
    CTAATAAATG CTAGTATCAG ATATCCTGAC TGTAATGTTC TGTAGTTCGG 
    AAATTGTTTG TGGCTGTGCA TCAATAAAGG TTGTGAAATG AGCCTAACAA 
    CCAAGTTGAA TAAACCATGA AAATTAGCCA TGTAATCAGA TGTGTATCTG 
    ATTTTAATTC TTTGATCTTC AAGCTTTAAA GTAGCTTACA GAGATTCTAG 
    TTTGACTATT CCTATTGGCA ATTTGCATAT GTATTTTATT TATTTGTTCT 
    GTACTTTTAT GCTTTTAGAG AAGCCCATAA TACACAGGGA TGTGAAGTCA 
    TCAAACATTC TACTAAATGA AGGCTTCAGG GCCAAAGTGG CCGACTTTGG 
    ATTTGCAAGG ACTGGTCCTA CAGAGCCAGA CCAGTCACAG ATTCAGACTG 
    ATGTGAGAGG AACAGCTGGC TATGTAGATC CAGAGTATCT CAGGACAAAC 
    CATCTGACAG TCAAGAGTGA TGTATTCTCT TATGGAGTTT TGCTCCTGGA 
    AATTCTTTCT GGTCGTCGTC CTATTGAGGT CAGGAGAGCT GCAAGAGAAA 
    GGATCACCGT GAGATGGGCC TTCGAGAAAT ACAACAGAGG TGATGTTAAG 
    GAAATATTGG ATCCAATGTT GACCGAGTCA GTAAATGAGG ATATACTGAA 
    TAAGATTTTC GATGTAGCAT TCCAATGTGT TGCTCCTACT CGTGCTGACA 
    GGCCAACAAT GAAAGAAGTT GCAGAGAGGC TGTGGAAGAT AAGAAGGGAT 
    TATGCAAAAA CCCAACGCAG AGCAGAAATG GCTCTGTAAA CCATCTGATC 
    CTAGCTTCTG CTTTTACTCG AGAGAGCATT TGGTGAACTC ACCAGTGTCC 
    AGCAAAGATC CACAAAAACA AGTTCAGTTT TGCGAATCGG GACAACTAAA 
    ATCTATACAT GGTTGCAGGA TTATTATATG CGCTGTACAT GGACTTGCAT 
    GTTTAAAAGA TCAATATGAT GTACACCGAC ATGTGAATCG AAGTTTTCCC 
    CATATAGCCT TTTTGCTCTA TCCAAGCTTT CAGTAATTTG TGTCTCAAGG 
    AAGTGTGAAT GGTCTTGTTT TGAAGCCTTT CAACACTCAA CAGTTCTTGA 
    TACAGCTTTC CGTTCTTGTG TATATTTTGC TGGTCCTCCT AGTGGTACAG 
    CTGATCTTTT TGTCATGTTC AGTGTTGCTC ATGATGTGAG GTGTTTTTAA 
    GTGTAATTAT GGCTTTTGGG ATGCTATGTT GTATTCGTGT GCTGTAACCA 
    GATCTTAAGG CAATGGATGT GCATTAATTG TGATTTTTT

    Gene models with high sequence identity

    1. AT2G11520.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 3
      E-value: 8e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00054
    Gene3D no description 5.1e-06
    Gene3D no description 1.2e-34
    Coil coiled-coil 0
    HMMPanther WALL-ASSOCIATED KINASE 3.5e-34
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.5e-34
    HMMPanther WALL-ASSOCIATED KINASE 2.3e-76
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.3e-76
    HMMPanther WALL-ASSOCIATED KINASE 6.9e-12
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 6.9e-12
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 5.2e-16
    HMMPfam Serine/threonine-protein kinase-like domain 7.8e-25
    ProfileScan Protein kinase, catalytic domain 12.104
    ProfileScan Protein kinase, catalytic domain 21.814
    superfamily Protein kinase-like domain 1.2e-08
    superfamily Protein kinase-like domain 1.6e-17
    superfamily Protein kinase-like domain 1.4e-38
    HMMSmart Serine/threonine-protein kinase domain 3.1e-05
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.00021

    See the detailed result >

    AT2G11520.1

    Model type
    Protein coding
    Short Description
    calmodulin-binding receptor-like cytoplasmic kinase 3
    Curator Summary
    high overall homology to CRCK1
    Computational Description
    calmodulin-binding receptor-like cytoplasmic kinase 3 (CRCK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 123901 Blast hits to 122321 proteins in 5054 species: Archae - 113; Bacteria - 14763; Metazoa - 45926; Fungi - 10619; Plants - 33482; Viruses - 501; Other Eukaryotes - 18497 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR