K11230

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K11230

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K11230

Determination of introduced cDNA(s)

  • J033133L07 - Rice Full-length cDNAs - Original: J033133L07

    full reading [+] show sequence

    Nucleotide sequence: J033133L07 - full reading 
    GGTTTCCTTT CCCCACACTT CATCCCCCCC ACTTCCACCA CGCCGCCGTC 
    GTCGCCGCCG CCGCCGCCGC CGGCGGTCGC CCGACCTCGC CGGCGATATG 
    CCTGAAAAGG CGGCGGAGGC CAACCTCCGC AAGCAGCTGG AGCAAACCCT 
    CGCCGGCGAG CCATCCAGCC CGCTCCACCA CTACAACCTC GGCGTCTTCC 
    TATGGGACCG CGCGGAGGCG GCGGCGAGGG AGGAGGGCGA GGAGGAGGAG 
    GAGGTGAGGC GGCTCCGTGC GGCGGCGGCC GAGCGCTTCC TCGCGGCGGC 
    CAAGCTGGAC CCCAACGACG GCGTCCCCTT CCGCTTCCTC GGCCACCATT 
    ATGCGCTTGC CGGCGACGCG CAGCGAGCGG CCAAGTGCTA TCAGCGGGCG 
    GCGACGCTCA ACCCTGATGA TGCCGAGGCT GGGGAGGCGG TCTGTGATTT 
    GCTAGATTTG GAGGGCAAGG AAAGCTTGGA GATCGCTTTG TGCAAGGAGG 
    CAGCTGGCAA GTCACCCCGG GCATTTTGGG CGTTCCGGAG GTTGGGGTAC 
    TTACAGGTTC ATCAGAAGAA ATGGTCAGAG GCTATACAGA GCCTTCAGTA 
    TGCAATACGA GGTTACCCAA CATGTGCAGA TTTATGGGAA GCACTCGGTC 
    TGGCATACCA CCGTTTGGGC ATGTTTACTG CAGCAGTAAA GTCGTATGGG 
    CGAGCTGTTG AACTGGATGG TTCCAAGGTC TTTGCGTTGA TAGAAAGTGG 
    AAACATCCAG CTAATGCTTG GTTATTTTAG AAAGGGTGTT GAACAGTTCC 
    GCTCTGCCTT GGAGATGGCT CCTCAAAATC ATTCCGCGTA CTTTGGTCTT 
    GCTTCTGCAT TGCTTGCTTG GGCAAGGCAG TGTGTAATGA CTGGGGCCTT 
    TGGCTGGGCA GCTAGTCTGT TGAAGGAAGC ATGCAAAGCT GCCAAAGTTT 
    GTACTTCTTT GACTGGAAAC CTTTCCTGTG TTTGGAAACT GCATGGAGAT 
    GCTCAGCTCG CACTTGCAAG ATGCTTTCCA TGGGGTGATG GTAATATCAA 
    GGGGGGTATG GATGATGGTA CTTTCAGGAC TACTGTACTT GAGTGGAGAA 
    ATACATGTTT GTTGGCTGCA AATGGTGCAA AATTCTCATA CCAACGAGCT 
    TTGCATCTCA CTCCCTGGGA AGCTAATATT CACAATGACA CTGCTATATG 
    TCTTGATCTC ATTTATACCA TTGAGGAGAA TAATAGTCTA GATCCCATAA 
    CTTGGGAACT GCCAGAGAAA ATGTCGTTGG GTGGGTTGAT ACTGGAACCA 
    GTCAATAAGG ATTTTTGGGT TACATTGGGC TCGGTGTCAA GTAATCAAGC 
    TTTAAAACAG CATTCTTTTA TCAGAGCACT GCATCTTGAT ATGTCTCTCT 
    CTGAAGCTTG GGCATACCTT GGAAAGATTT ACAGGCATTC AGGTGATAAG 
    CAGTTGGCAA GACAAGCATT TGATCGAGCT CGAAGCATTG ATCCTTCACT 
    GGCCTTGCCA TGGGCAGGAA TGTCAGCTGA AAATTACCAC CAGCCTGGGG 
    ATGGGCCAGT AAATGAATGT TTTGAAAGCT GCTTGCGGGC TGTGCAGATA 
    CTTCCTCTTC CAGAGTTCCA GATTGGTCTT GGAACAATTG CTGCTCGTTC 
    TGGTGAACTT CTATCACCTC AGGTATTGAT GGCTGTAAGG CAAGCTGTTC 
    AACGGGCACC TCATTACCCT GAGTCGCACA ACATAAATGG CTTGGTTTCT 
    GAAGTGCGAT CAGACTTCCA ATCTGCAATT GCATCGTACC GACAAGCAAA 
    ATTTGCTTTA GATATGATGC GCAACTCCAA AACAGACTGC AGATGTCATA 
    TTGCTGATAT TTCCGTGAAT CTTGCCCGGT CACTATGTAA GACTGGTCTT 
    GCAACTGAGG CAGTGCGGGA GTGCGAAGAA TTGAAAAGAC AAGGATTTCT 
    GAATGATGAC GGATTGCAGA TATATGCTCT TTCATTATGG AAACTTGGTC 
    GGCATGATGA AGCTCTTTCA GTATCAAGAA ACTTGGCTGA AAACTTATCG 
    AGTATGAAGC AGGAGAGTGC AACTGCAGCT TTAGGATTCA TATGCACGTT 
    GACATACAAC ATCTCTGGGA AGGACTCTGC AGCTGCGGTC ATTCATAAAC 
    TGCCTGGTCA ACTCAATTAC AGCACACAGC TGAAATTTAT TATCTCTGCA 
    TTAGATGCTT TACAGCCAAA CAAGCGTTTT CAGTTACCCC AGCTGAGTAT 
    GCCTCCTAGG CTTACATCGT ATGAAGTCAT GAGTGAAGTC CACTCAAATA 
    TTGCTCTTGG AAATGCTATT GGTGGGGAAT CAGACAAGTT TTTAAGGGTT 
    GATGGTGGCC TGTCTTACCT GAAAAAGGTT CTACACATGT ATCCCGACTG 
    CAGTTTAGTA AGAAACCAAC TTGGATCTCT GCTACTGTCA AGTGAAGATT 
    GGATGGCTTC TCATAAAGCA GTAAGGGTTA CTTCATTGTC CCGGGGATAT 
    ACATCCAATA GGGGCTTAAG ATCTCCACAC CAAATTCAAG CATGTGCAGC 
    AGTTTCTTGC TATGCTACCT GCACTTCTTA CCCAAAGTTC TCTTTTCCAA 
    CATGTGAAGA TCAATACCTA AGCGGATACA ATGCAATATG CCGCCTGCAA 
    AGGTGGGTTC ATCTAGAACC GTGGAACCAA GATGCACGTC GCCTCCTTGT 
    ACTTACCCTT TTCCAAAAAG CACGTGAAGA AAAGTATCCG AAACATATCT 
    GCACCATTTT GAAGAGGCTG ATTTTGCAAG TTCTCTCCAG TGGTAGCAAT 
    TCACAAGACA ATAAGGTGGT TCAGTATGGG AACTACTTGT TACTTCTTGT 
    GGCTTCAGAG GTTAGTTTGC AATCTGGTGA CCATGGCAAC TGTATTGCTC 
    AAGCTACTGA AGCTCTTGGA GTAACTTCTT CGAGCGTGGA TTCTTTCTTT 
    GCACACTTGC AACTGTGTCG GGCCTATGTG ATGCAAGGCA ATCTTTTGAA 
    CTCTAGGAGT GAGTACATGA AATGCCTGCA AAACCGTACA GATACTGAAA 
    TTGGCTGGGT AATACTTAAG CAACTTGCAT CTATATGTTC ACTGGAGGGT 
    ACCCCTGATG AAATAGAGAT ACATCTCGGA GGATGCGTTG AAAGGAAAGG 
    TAGCAATGCA TCCAAATGGA TGTCTCTTTT TTATCTAGCA TGCGCTCAGT 
    GTTCAGTATG GAATGAGGAC TTTGCAAGTG CTGAAAAAGC TATTGCTCAG 
    GCATGTGCTG AAGGGGATCC TGACAGCTGT GTCTTATTTC TCAACGGCGC 
    AATTTGTATG GACATTGCTT GGAGGTTCGC GGCCCCTCAA TTTATAGCCC 
    GTGCAGCTTC CAGCCTCAGA AAGGCACAGC AGAAATCACT TGCTTCTTTA 
    CCTATTGTGT CCCTCTTACT GGCCCAAGCA GAAGGCAGCC TTGGCTCCAA 
    AGCCAAGTGG GAGAAAAACC TTCGTCTAGA GTGGTTCTCA TGGCCCCCAG 
    AATTGAGGCC TGCTGAGCTC TATTTCCAGA TGCATCTTCT GGCAACGCAG 
    TCAAGTGCAG CAACTTCCCA GCAGAACCAG CTAGTGGAAA CCATGCAAAC 
    CCCAGAGAAG TGGCTTCTCA GGGCGATACA CCTGAACCCG TCGTGCTCTA 
    GGTACTGGAC GGCTCTGATG CAACTCGTGT ACGTGTAACC CTTCGAAATT 
    GGAAGCACTG ATCTTTGGTG AAACCAACCA CAATGTAGCG CATTTCTTGA 
    CTCAGCTGTA AGCATATGGA TTGGCTGGAT GAACTGCCGA CCTGTCTGTG 
    ATAAGTGAAA AACCTGCATA TGCTTGCTTA CCGTGTTGAG GGCTGAGACG 
    TGAGATGTTT CCGG

    Gene models with high sequence identity

    1. AT1G76630.2 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tetratricopeptide repeat 9.706
    ProfileScan Tetratricopeptide repeat 7.021
    ProfileScan Tetratricopeptide repeat 10.414
    ProfileScan Tetratricopeptide repeat 8.762
    ProfileScan Tetratricopeptide repeat 11.092
    ProfileScan Tetratricopeptide repeat-containing 28.967
    ProfileScan Tetratricopeptide repeat-containing 10.372
    HMMSmart Tetratricopeptide repeat 0.39
    HMMSmart Tetratricopeptide repeat 11
    HMMSmart Tetratricopeptide repeat 0.0029
    HMMSmart Tetratricopeptide repeat 25
    HMMSmart Tetratricopeptide repeat 0.00087
    HMMSmart Tetratricopeptide repeat 420
    Gene3D Tetratricopeptide-like helical 4.3e-36
    Gene3D Tetratricopeptide-like helical 1.3e-17
    superfamily Protein prenylyltransferase 1.9e-33
    superfamily TPR-like 7.3e-21
    superfamily TPR-like 2.9e-11
    Coil coiled-coil 0
    HMMPfam Tetratricopeptide TPR-1 0.00017
    HMMPfam Tetratricopeptide TPR2 2.1e-05
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 6.1e-18

    See the detailed result >

    AT1G76630.2

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1).
    Link
    InterPro Scan - TAIR