K13845

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13845

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13845

Determination of introduced cDNA(s)

  • J033115B22 - Rice Full-length cDNAs - Original: J033115B22

    full reading [+] show sequence

    Nucleotide sequence: J033115B22 - full reading 
    TTGGGGCTCT GAAGTAATCC TTCGCTTCTG CTTCTTTCTT CTTCTGCATG 
    TCCTGTCTGT CCCCCTCGTC TCGTCTCGTC TCGTCTCGTC TCTTGCTTTC 
    GCCTCTCCTG ACCTGACCGC GACAATCCGT GGTGGTTATA TCGCGCAGGC 
    GCTTCGCTTG GTTTGGCGTG TTGTTTGGCT GCCGCGGCAG TTTTCTCCTG 
    TCACATATCG CAGAGGGTTC TGGAAGTGGG AACATGGAGG CGAAGCAGAG 
    GACGAGGCAT CGCGACGGAG AGGAGAGGAG GCTCGTAGCG GCGGCGGATG 
    GCGGCGCCGA GGAGTACGAC CCATGGACGG CGTGGCTCTA CAAGCCGCAC 
    ACCATCTCGG TGCTCCTCGT CGGTGCTTGC CTTCTAATTT GGGCAAGTGG 
    AGCGCTTGAT CCAGAGGGTG CTTCTTATCA CAGTAGTGCG ACATCTATTA 
    AGAGGGGTGT CTGGGCTATG ATTGCAGTCT TCCTTGCTTA CTGCACTCTC 
    CAAGCACCTT CAACGATACT TATTAGGCCC CATCCTGCTG TCTGGCGCCT 
    GGTGCACGGA CTGGCTGTCG TTTACCTTGT CGCTCTAGCC TTTCTTCTTT 
    TCCAGAACCG CGATGATGCT CGCCAGTTCA TGAAACACCT TTACCCTGAT 
    CTTGGAGTTG AATTGCCGGA GAGATCTTAT GGAGCTGACT GCCGTCTGTA 
    TGTTCCGGAA AACCCTAAAA ACAAGTTCAT AAATATTTAT GTATGATTTT 
    TCATTTGAAC CTTCCTATTT CATGCTCTGG TTTTTGTTAT TATTGTAGTT 
    ATTATCATTG TTATTACCCC ATCATATTTG ACGGTTTGAT ATACATATAG 
    GAGACATTAT TTGACGAATT TGTGGTTGCC CATATTTTGG GTTGGTGGGG 
    TAAAGCCGTA ATGATACGAA ACCAGCTTCT TCTTTGGGTC CTCTCGATTG 
    GTTTCGAGCT AATGGAGGTT AGATATGGTT ACTCAACCTT TTGTTATCTT 
    TTACTTGTTA TCTCTAACAA GGTATTGTGC TTATTATGAC CTTTTGCAGC 
    TTACATTCAG ACCTATGTTG CCAAACTTTA ATGAGTGCTG GTGGGATAGT 
    ATTATTTTGG ATATCTTGAT CTGCAACTGG TTTGGTAGGA CAATCGGAGA 
    CAGCTGACTT TCATGTTGTA TACATTCAGT GACATTGATG ATACATTTTT 
    TACATCTAAA GTTATTAGTA AAACAAAGTT AGGCAGATTA AAATAATATA 
    GTGTTTTTGG GTTTGCATAT TTTATACAGT TTGTTTGGAT CTAACTCTTA 
    TCAACTGAAC ATGATAATAT AGAAAATGAA TAGCGATGTG ATGTATCTGA 
    GAGTTTTAAG AAGAAAACTT AGACCTGATG CACATGCATA CTGCTGACAT 
    TAAACACTTA CTGTTTATGA AGTAATATAA TTTATCTTCT TCTATCAGTT 
    CATGGGTTGA AAGCAATCTT TCTATTTCAG TAACCAGTTA TTGAAAGAGT 
    ACCTGCATAT GCACGTTAGG GTCAAAAGTG ACAAGTAAAT GTGAATGGAG 
    GAAGAACAAA TCTGCCATAT AAGCCTCACT CTTAGCAGTA GGCTATGGAG 
    TGTTTTATGT GTTCAGCTTC ATCTAAATAT TTTGGCTGAA ATGCTAATAT 
    TCTTATTCAG GTATATGGGC GGGGATGCAC ACAGTCCGTT ACTTTGACGG 
    TAAAACATAT GAGTGGGTTG GACTGAGCCG ACAGCCAAGC ATCATGGGCA 
    AGGTGAAAAG ATCACTGAGC CTGTTCACCC CTGCACAATG GGACAAGGAT 
    CAATGGTACC CTTTCATGGG GCCGTTGCGG TTCGTTCAAG TGTTGTTCCT 
    GTGCGTTGTT TTCATGACAG TGGAGCTCAA CACATTTTTT CTTAAATTTT 
    GCCTCTGGAT TCCTCCAAGG AATCCTTTGG TTGTGTACAG ATTAATCCTA 
    TGGTGGTTGA TTGCTATTCC AACCATCCGT GAGTACAACT CCTACTTGCA 
    AAACAGCAAA CCGGTGAAGA AGGTTGGGGC TTTTTGCTGG CTCTCTCTAG 
    CTATATGCAT TGTAGAGCTT CTTATATGTA TGAAGTTTGG ACATGGGCTG 
    TTTCATGATC CCATGCCTAC TTGGTTGATC ATCTTTTGGA GTTCGGTGGG 
    GGTAGCACTA GTGGTTTTCT TGCTTGCATG GTCTTGGAGG AATCACCTGA 
    AATATCAGAG AAAGCGGCTA TAATGGATTA ATTTTTCGGA AGATTTTCGA 
    CTCTGGACCC CCTTCAAACT TGTTTCTTCT TCTTGATAGG ATGTACATAT 
    GTGATGGGTG ATGATGTAAC TTAAATGTGA TGGGTAATTA TGTAACTTTA 
    AATCCTAGGA TAAAGCAATT TTCAGCTACA TTTCACATTA TGTTTTACAA 
    TAGCCAATTG TTGCCTCGCA AGAGGGATGG CTAATTTCAG ATTAATAAGT 
    GAAATATTAC CATG

    Gene models with high sequence identity

    1. AT1G15110.1 [+] show detail - phosphatidyl serine synthase family protein
      E-value: 7e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Phosphatidyl serine synthase 4.8e-12
    HMMPanther Phosphatidyl serine synthase 1.2e-06
    HMMPanther Phosphatidyl serine synthase 2.5e-28
    HMMPanther Phosphatidyl serine synthase 1.1e-67
    HMMPfam Phosphatidyl serine synthase 2.1e-48
    HMMPfam Phosphatidyl serine synthase 2.1e-14
    HMMPfam Phosphatidyl serine synthase 1.7e-22
    HMMPfam Phosphatidyl serine synthase 4.6e-17

    See the detailed result >

    AT1G15110.1

    Model type
    Protein coding
    Short Description
    phosphatidyl serine synthase family protein
    Computational Description
    phosphatidyl serine synthase family protein; FUNCTIONS IN: CDP-diacylglycerol-serine O-phosphatidyltransferase activity; INVOLVED IN: phosphatidylserine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidyl serine synthase (InterPro:IPR004277); Has 329 Blast hits to 325 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 10; Plants - 65; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR