K13924

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13924

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13924

Determination of introduced cDNA(s)

  • J023077A20 - Rice Full-length cDNAs - Original: J023077A20

    full reading [+] show sequence

    Nucleotide sequence: J023077A20 - full reading 
    GAATAGACGC TAAGCTGATT ACCTGCACTT CTCCCTAGCA GGGAGGAAGG 
    AATGGCAGAA CCATTGGAGA ATTGGATCTT TGGCTCATCG TTGGGGGGTT 
    TCAAATATCG GTTCAATAGA TGAATTTAAT AGATTCTAAG GCAAATAGTA 
    AACCATATAC TAATCAGAGC CTTTGAGAAA GATGGCAGAA ACTGAAGATA 
    CTCAGTTACA AAAAGCAATA TTCGCACAGT ACATTATGAT GAAGAAGTTA 
    TTCATGGAGT TGGAAGAGGA GAGAGAAGCT TCAGCAACTT CTGCAAGTGC 
    AGCCTTGTCA ATGATTCGAA AGCTTCAGAA GGAGAAGGAG GAGCAGAGGA 
    TGGAAGCATG GCAGTACAAG AGGATAGCTG AGGAAAAGAT TAGCCACAGT 
    GACAAAGCAC TGGAGATTCT ACAGGAAGTC CTTCAACAGA AGGAACTGGA 
    GAATTTTTAT CTGAGAAACC AATTGCTGGT GTATAAACAC AAGCTATTGG 
    ATGTTGGTAT TGATGAGTGT GATATTGCAG ACGAGACGAT AACTAACAAT 
    ATACCATTAT TTGAAAGCAA AACCGTGGAG AATCTTTGTC GTAGCATCAA 
    AAGGAATTTC TCTCTGCCAA CTTTGCAGAT GAAGAAACTT TTTGCCGAAA 
    AGGACACCGA CAGAAATGTT GAATCAACAA AGAGCAGATT AGGTGGCTTT 
    GTTTGTAATT TGAGTGAAGA TGAATTGAAG CATATTTCTG GAAATGCTAG 
    TGACTTCAAG GCTCTAGAGG TTCAGAAAAG CTTGCTGACA GATGGGGATG 
    CCACAGAAGA ACATGGAGAA GAACCAAATC CTCCAAGCAG TGATCTTTCT 
    CAACAACCTC ATCTCTTGGA AGAGTCAAGT TGTTCCTCCT CGTTGTTGAG 
    TAATCATAGA GATACATCCA GTGAAAGAGC AATACAGGTT GGGGAAAATG 
    CGGAAGATAC ACGACATGGT GATCAACTCA AGCAGTCACA TTCAGGCATT 
    GGAAAGGAAG AAGTACAATC ACATCCCTTG GAAGAGTCAT CAAGTTGTTC 
    CTCGTTCTCC ACATCGAGTA ATCACAGAGA TATATGCAGT GAAAGAGAAA 
    TACAGGTTGG AAGAAACGCA GAGGATGCAC CACATGGTGA TCAAACCAAA 
    GAGTCACATT CAGGCATTGA AGCGGAAGAG GTTGCAGTTC ATCCTATAAG 
    TGACATCGTT GACACAATCA AGATTCAAGA AAGAAGCCAA GGAGTAGAAG 
    AATCCTCATG CACTGCAAAT GAAATCATCA CAAAGGAGTC AGAACTTTCT 
    CCCAAGGACG TTCCGAAAGA GCGGCGGCCT CAGGCTCTAT CCAAGTTATC 
    TGCAACAAGA AAAGTTGGCT CCATGAACAA CCTCTACAGG AATGTCCATG 
    TAATCACCGA TAAGAGTTCG ACGCCACGAG GAAAGAATTC AACGCCACGA 
    GCTGGCACTG AGAGGACCAG ATCAAGGCTG AAGCGGGTGC AGAGCGAGAA 
    GATGGTTGAG ATGAATGACA CCAGGAAAAA CAAGGAGCAG ATCATAATGC 
    TCAAGGAGGT GTACGAGCAG CTTAACATGA TAGAATCGCA CATGAGGCCT 
    TCGACTTCAC AGGAGACCCC TCGGAATGAC CAATCCTTGG AATCTGTCTT 
    GGAGGCGGCT CTGTCCTTCT CCTTATAGCT AGACCCTTGT GGCCTCTACT 
    CTACCATCTG AACTTCTGAA GCATATATTC AGAGGCCACC TCCAGTTTTG 
    AGGCGGCCAT CTATCAGGAA CATCTCTTCC ATGAATACCC AACAGGGGAA 
    ATGCATAGAG TTTTTATATG CAGTGTAAAA CTGCAAACTC CCATGGTGGC 
    GTTCTTTGAG AAGTCTCATA CACACACTCA TCTATCAAGG CCTCCTTCGA 
    GCGGAGGATT TTCGAAGAAA TTCTGCAGGA ATTGAACTAA TTCCTGTAAA 
    ATTCTGTGAA GTTTTCGCGT TCGGGAGTCC AAATAGAAAG AAATCTAGGT 
    GTTGGGTCTG TGGGCTGTGG CCTGACGCCC CACTTCGGCA ACCAGGCATC 
    CGTTGTAGCA ACGTTCTTTT CACAGTGGCA GCGGCCAATG CAGCCGTTAT 
    GTTACTTGTG TGAGAAAGTT TTACGGTTCT ACAGAGACAA TTTTTTTTAC 
    CTTATCACAC TAAATATAGT TAATGCCATT TCTCTG

    Gene models with high sequence identity

    1. AT5G57830.1 [+] show detail - Protein of unknown function, DUF593
      E-value: 1e-11; Score: 68.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF593 2.4e-20
    Coil coiled-coil 0

    See the detailed result >

    AT5G57830.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF593
    Computational Description
    Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT4G30830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR