K13932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13932

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13932

Determination of introduced cDNA(s)

  • J023118I21 - Rice Full-length cDNAs - Original: J023118I21

    full reading [+] show sequence

    Nucleotide sequence: J023118I21 - full reading 
    GGTCTACGAG GACGAGAGAA CGAGGAGGCA CGCACGAGAG CTCCTCCTCC 
    CACCCAAGCA CGGTGGAGCT CATGTTCTCG GTGCCTGTTC TCAATCCTAA 
    TAAAGTTGGC TGACGTTGCA TCGCCGGCCT GGCAAAAAAT CAGTGCTTGT 
    TTTTGTCTTG AAGCTTCCAC GGTTCCACTA ATAACTCAAG TTCCTTCTTT 
    CCTGAGAACA GCCCATTTCA GGAGGGATCT TAGCAGAGTA CGTCAATTTT 
    ATTATTCAAT ACTGCTTGTG GATAGAATTA CTCTGTTGGC AAGGTTCTTT 
    GTTTTAAGTA ACAAATGAAG GATCATCTAA TGCTTAATGT TAGCAACCTT 
    CCCGAGTCTG TTGAGGCGAC CGAGGCAGCC ATGAATCTGC CTTCCGGGGG 
    AGTTTCTCTA CCACCGTTGT CTACAACTCA TACACTTTTG TCAGTTCGGG 
    AAAGCATGGG TGCTGAGGAA GAGCCTCTTA TTCAGACAGT AGAATGTCGT 
    ATTTGCCAAG AGGAGGATAA CATCAGCAAC CTTGAGAGTC CATGTGCTTG 
    CACTGGAAGT CTAAAGTATG CTCATCGGGC TTGCGTGCAG AGATGGTGCG 
    ATGAGAAAGG AGATTTGACA TGTGAAATTT GCCATGAGCC ATACAAACAC 
    GGGTACACTG CACTTCCTAG AGCTCATCCT GATGAGACAA CCATTGATAT 
    AAGTGGTGGT TGGACCATTA CCGGCACAGC ATTTGATTTG CATGATCCAA 
    GGATTATTGC AATGGCACAA AATCACATAA TGGAAGCTGA CTATGATGAT 
    TATTCAGTAA CAAATGCGAG CTCTGCTGCC TTTTGCCGCT CTGCTGCGCT 
    TATTTTAATG GCTCTGTTAG TGTTGAGGCA TGTGTTGGTA CTAACTGATG 
    AAGATGAAGA CGACGCTTCT TCAATGTTTT TGCTTTTTCT ACTACGAGTC 
    ACCGGGTTTC TGCTACCATT CTACATCATG GCTTGGGCAA TCAATATCTT 
    ACAGGGCCGA AGGCGGAGGC AGGTAGCGGC TGCTCTAGCT GCAACTGAGG 
    TGGCATTCAT TCTACAGTCA GGACAAAGAA GGGGCATGAA TTTCACCATC 
    GCACCAGATT CCCCTGCCAC ACCTCAGCAT GAGCCTATCC CTTGAATTAA 
    TGTTGTCAGC ATCACTCAAG TTCATGTGGC ATTGTTTAGC TGATGACTTG 
    ACGAAGAATT TGTTAATTGT GATTAATTGA TTATTCAGCA CAAGATGAGA 
    TGCAATGTCA TCTCTTATCA GATAGAATGT ATTAATTCAT GTATGTTTTG 
    GTGTGTGTGT GTGTAAGAGG TGTCTGTGAT ACTGAAGCCC CTTTTTTATG 
    TATGTATGGT ATGGGTTCTG TGTTCAGTGT CCTGCGTATA GGTAGAGAGC 
    ACGGAGAAAC ACTTTCAGTA GGTTCCTAAT TTTTGTCTCC CAGAAATCCT 
    TGATTTTATT TC

    Gene models with high sequence identity

    1. AT3G47550.6 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
      E-value: 8e-68; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6e-13
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 2.1e-13
    HMMPanther MEMBRANE ASSOCIATED RING FINGER 2.1e-13
    ProfileScan Zinc finger, RING-CH-type 21.578
    HMMPfam Protein of unknown function DUF3675 1.9e-38
    HMMPfam Zinc finger, C3HC4 RING-type 8.8e-08
    HMMSmart Zinc finger, RING-CH-type 2.3e-20

    See the detailed result >

    AT3G47550.6

    Model type
    Protein coding
    Short Description
    RING/FYVE/PHD zinc finger superfamily protein
    Computational Description
    RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR