K14122

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14122

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14122

Determination of introduced cDNA(s)

  • J013155G09 - Rice Full-length cDNAs - Original: J013155G09

    full reading [+] show sequence

    Nucleotide sequence: J013155G09 - full reading 
    GTCCCTGCTG CTGGTACTGT GCGTGGGCCG GAGGGCGAGA GTGAAGCTTG 
    AGCCGTCTCG CCGCGGGCGC TGCTGCTGCT GCTGCTGCTC GCGTCCGATT 
    CCGACGAGAG GCTGGGAACT TCAAAGCTGA AAAGGACTAA TGGAGGGTGG 
    AGGCGCAAAA GATGGTTCTG CAGCGGCAGC GCAAACAAGG GGGAGTGGGG 
    ATGATGGTTC CCACAAGCCG CTGCCGCCTT GCTGTCTCAA GGCGAAGGCT 
    GCGGCAGTAG AGTCTGAGGC AAAATGCCAT GCCACAGTGG TGTCAGGGTG 
    GTTCACGGAA CCCCGCTCGC GCTCTGGTAA AACAAGCAAA GTGCAGTACT 
    TCAACAATCC AATGTGGCCT GGAGAAGCTC ATTCTCTGAA AGTAGAGAAT 
    ATTCTGTATC AAGGGAAATC ACCATACCAA GAAATCTTAG TTTTTGAGTC 
    CTCAACCTAT GGGAATGTTC TGGTGCTTGA TGGTATTGTG CAGCTGACCG 
    AAAAGGATGA ATGTGCATAC CAGGAAATGG TTACTCACCT TCCACTGTGC 
    TCGATTCCAT CCCCCAAAAG TGTTTTGGTT GTCGGAGGTG GTGATGGTGG 
    TGTGCTACGA GAAATAGCCA GACATGCCTC AGTGGAGAAC ATCGATATAT 
    GTGAAATAGA CCAGCTAGTT ATTGATGTCT GTAAAGATTT CTTCCCACAA 
    CTATCTGTTG GATTCAAAGA TCCCCGTGTT CAACTTCATG TTGGTGACGC 
    TGTGGATTTC TTGAGAAATG CCCCTGAAGG GAAATATGAT GCTATCATTG 
    TTGATTCATC TGACCCAATT GGGCCAGCTC AGGAGCTTGT GGAGAAGCCC 
    TTTTTTCAGA CAATTGCTAG AGCTCTAAAG CCTGGTGGAG TTCTATGCAA 
    TCAAGCTGAG AGTATGTGGC TGCACACACA TCTAATTCAA GATATGCTTT 
    CTATCTGTCG TGAAACATTC AAGGGAGCTG TGCATTATGC CTGGACAAGC 
    GTTCCTACCT ATCCTAGTGG TGTCATTGGT TTTTTGCTAT GTGCGAAAGA 
    AGGTCCAGCA GTGAACTTCC TTTCTCCTGT GAATCCAATT GAGAAACTGG 
    AAGGAGCTAT GGAAGCTGGA AGGGAAATCA GATTTTACAA TTCAGAGGTT 
    CATCGGGCTG CTTTTGTTCT GCCAACATTT GTAAGGAGAG AACTGGAATC 
    ACACAATACT TGTGCTGAAA AGGATAAATC AGAAACCAAG CCAGTCGCGA 
    AACCAAAGAA GATGAAAATA ATGCCGAATA GTGCCATTCC GACTGCTTCC 
    TAGATTCGGG CGGCCATATG CGACAACCAT GTTCGACGTC CTTAGCTACA 
    GTATATGCCA ACTATAAGAG GAGAATGTCG CTGTAACTCT TCTGTCTTAA 
    GTATGGTATG TTATGCCTGA CTGAATAAAA GGGAGGAACA GATGAGATGT 
    GAACCAAAAT AATGTTCTTC CTGATCCGTG AGCACTGTTG TAGTGTTGCC 
    TGTTGTACAA ATGTATATTG TCACAGCACT GATGTGTTTA TTATATGGAT 
    GTGGAGTGAA TCGCATGGAT AATGTGCCTT TTTATCCCCT AAAATCTGCA 
    ATCTTCCCTG GTTC

    Gene models with high sequence identity

    1. AT5G53120.5 [+] show detail - spermidine synthase 3
      E-value: 2e-140; Score: 496.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP SPEE_MF_00198 31.979
    HMMTigr Spermine synthase 7.4e-115
    HMMPfam Spermine synthase 2.7e-89
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-91
    Gene3D no description 1.8e-09
    Gene3D no description 1.1e-80
    PatternScan Spermine synthase 0
    ProfileScan Spermine synthase 101.41
    HMMPanther SPERMIDINE SYNTHASE 1.1e-206
    HMMPanther Spermine synthase 1.1e-206

    See the detailed result >

    AT5G53120.5

    Model type
    Protein coding
    Short Description
    spermidine synthase 3
    Curator Summary
    encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
    Computational Description
    spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1); Has 5367 Blast hits to 5364 proteins in 1535 species: Archae - 174; Bacteria - 2998; Metazoa - 341; Fungi - 210; Plants - 426; Viruses - 0; Other Eukaryotes - 1218 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR