K14218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14218

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14218

Determination of introduced cDNA(s)

J013089I21 - Rice Full-length cDNAs - Original: J013089I21

full reading [+] show sequence

TTTGATCATT ATACAACTGC ATACATGAAC TCACCTTGTT ATCCCCTTCC 
GGATATGTCT CATGTTAACG GTAAGAACAG GAAGGAATTG CTTGCTATGG 
CTAAAGTACA AGGCGAGAGT AAAAAAGGAA CTTCAGTGTT ACCAGGGGAT 
TTGACCCCTA AGGACGAGTC TCCATTTTCT CCCCCAAGGG TCAAGGTGGA 
AGATGCACTT GGAGAAGGTT TAGCTGGTCG ATCACCTTCA CACATAGCTG 
GGGGTGCAAA TAAGAAAGCA TCAAATGTTG GACAATTCAA AGATGGTGCT 
AATGTAGCAA AAGTTGAAGA TGGTCATGTG GATAGAAGTA TAGGTGTGAA 
AAAACCCCGA TATTCTGCAG ATGAAGGGCC TTCTTTGACT GAACTGAGTG 
GATACAATTC AAAGAGACAT GAATTTGACC CAGAGTATGA TAACGATGCT 
GAACAGGCAC TCGCTGAGAT GGAGTTTAAA GAAACTGATT CGGAAACTGA 
TCGTGAACTG AAGCTAAGGG TATTGCGTAT TTACTTGTCA AGGCTTGATG 
AAAGAAAAAG GAGAAAAGAG TTCATACTGG AAAGAAACTT ACTATTTCCT 
AATCCTTTGG AGAAGGATCT CACAAATGAA GACAAGGAAG TTTACCATCG 
CTATAAGGTG TTCATGCGTT TCCTTTCTAA GGAGGAACAT GAAGCACTTG 
TTAGGAGTGT TCTTGAGGAA CGGAAAATTC GAAGGAGGAT TCAAGAGCTT 
CAGGAATGTC GTTCTGCTGG ATGCCGTACA TTGGCTGAAG CAAAGATTCA 
CATAGAGCAA AAGAGGAAAA AGGAACATGA GGTGAATGCC CAAAAAGCTA 
AGGAAAGTGG TCAGCTCTTA TCCAACACTA AAGTGGTGCA TAAGACGAAT 
CGACCTATGA AAATCGAGTC AGATGGTAAT TTGGATCAGA AGAAAGGTGG 
TGCCAGCTTG GATTCTACTG GCAGGGATTC TCCAAAAACC ACAGGGCATG 
CAGGCACTAA ACATTGGGAT GACTGGGATA TTGTTGGTTT TCCTGGGGCA 
GAGCTATTAA GCACCAGTGA AAAAAATCTA TGCTGTCAGA ACAGATTGCT 
ACCCAACCAT TACCTGAAAA TGCAGGAGGT TTTGATGCAG GAAATATTCA 
AGGGTAGTGT CGCCAAGAAG GAAGATGCCC ATGTATTATT TAAGGTTGAC 
CCTGCCAAAG TAGATAACGT TTATGATATG GTGACGAAAA AGTTGGGTAC 
CAATGAGGAG GCCCCGACTG TTTAGCCATG TTTTTGAGTT CCTCAATCAG 
CGCGTGGTTT CTGATTTGCA GCATGACTAC TGAGACAGCT AAAATGGAGG 
CTATACTTGA ATTAAATTGG CTGTAGTTGA AATTTGTGTG AGGTGTCTGA 
AGAAGCACAA TAAGGCATTT CAGCCAAATT GTAAAATTAT CGCCCCGATT 
GGAATGTGTA GCATGAGTTT ACCATACCAT TACTCTCCAT TTTAAGAGGA 
TGGTTTGCCC TCGTTCGAAG TGTAACGTGT AACGTGTTGC AGAGCCACTA 
AAAGGGCCTT GACAGTATAG TGCCTGAAAT GATGTATGTA AACATTGCCA 
CCTTTTTCAT ATGTGACATC GTTCCGATAC CAGACGCTAT TTAATTGTTG 
TATTTCACTG CCTAAGAGGT TTCCTTTGTG TTT

Gene models with high sequence identity

AT4G16420.3 [+] show detail - homolog of yeast ADA2 2B
E-value: 5e-95; Score: 345.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	SWIRM	4e-05
HMMPanther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)	5.9e-172
HMMPanther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED	5.9e-172
Coil	coiled-coil	0

See the detailed result >

AT4G16420.3

Model type: Protein coding
Short Description: homolog of yeast ADA2 2B
Curator Summary: Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations.
Computational Description: homolog of yeast ADA2 2B (ADA2B); CONTAINS InterPro DOMAIN/s: SANT, eukarya (InterPro:IPR017884), SANT, DNA-binding (InterPro:IPR001005), Transcriptional adaptor 2 (InterPro:IPR016827), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SWIRM (InterPro:IPR007526), Zinc finger, ZZ-type (InterPro:IPR000433), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homolog of yeast ADA2 2A (TAIR:AT3G07740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR