K14350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14350

Determination of introduced cDNA(s)

J023045B03 - Rice Full-length cDNAs - Original: J023045B03

full reading [+] show sequence

GAGTTTTATG TTCCCATTCC ATTCCACCAT GCGGTCCACG CCCCCTCGAT 
TCTCTCTGCT TTCCGCGCTG CTGCTGACCG ACGACGGCCG CGCCCCTGTC 
CCGGTCTCCT CCTCGTCCCT CCTCCCCGCC TCTCCAGTCT TCCAGAACAT 
CGCCACCGCC ACCGCCGCCG CCGCCGCCGC TCGCCGGCCA CGACCGCCCC 
CGGCCCATCT ACACCTCCGC CGGATCTCGC AGCCGCGCTC CCCCCATTGG 
AGGGAGATCC GTTCCAGCGC GTGGGATTTA ATTTCAACAC ATGACTGGTG 
AAATGTTTGC TTGATGATGT CCGGACATGA TTTCAGTATT GTTCATAATG 
CAGTTGGCAT CTCATGCCAC TCAAGCGGAT GAAGCAACAG AGCTTGCTTC 
CAGCTGTGAT TGTGCAGAAG TGCCAGCTTC ACAGCAGATA GTTTCTGAAT 
CAAGTACAGC AGGAAGCTCC ACAGAGCATC TAGTTTCATG TGAAATCAAG 
CCACTGGGTG TTGATGAAGA CATTGAAACT ATTGATGCTA ACGAAGAAAC 
CCACCTTGTC ATTCAAGACT GTCCACAATG CCGGATTTGC CTTGATAATG 
AAGGTGATGA CTTGATTGCA CCTTGTCATT GCAAGGGCAC ACAGAAATAC 
GTGCATCGAT CCTGTCTTGA TAACTGGAGA TCAACAAAGG AAGGTTTTGC 
CTTTTCACAT TGCACTGAGT GTCGGGCTGC CTTCTTACTT CGTGCAAATG 
TTCCTCCAGA TCGATGGTGG TTGAGATTGA AGTTTCAACT TCTGGTTGTT 
AGAGATCACA CGTTGATTTT TTTTATTGTA CAACTGGTTG TTGCTTTATT 
GGGTATGCTA GTATACAGAT TTTATGGAGA TGAACTACGA GAAATGTTTG 
GTTATGAAGA GCATCCATAT GCTTTTTATG CAATGGCAAT ATTGGCTATT 
GTTTTGGTTG GTTTGCTGTA TGGATTCTTC ATAGCTATAA TATGTGGGCA 
GAGGATCACA GAACGGCATT ACCATGTTCT TGCAAAGCAA GAGTTAACCA 
AGGAGTATAT TGTAGAGGAT CTTGAAGGAA CTGATGGAGT TCCTGACCTT 
GATCCTAATC ATGTTACAGA GCTGAGGATT CTGGGGCTAT ATTGAGTACT 
GGAGATATCA TCAATTCATC AGGTAGGAAA TTTAGCACTT GTGCTATAAA 
ATGTCTGTTT AGATCTTTTT ATGTGGTTGC TACTTCCTCA GAGATCTCTC 
TTTGCATCCT ACAAATGTAG CAGAGCTCTT GATTAACAAT AGCCACTTAA 
AATGATAAAA TGTGGCATCA AGCATCTCAC ACATCCATAT TTTGCCCCAG 
ACATATGTTT TTGGTCATTT TCTACAGTTT TGTTTTGTAC TAATGTGCAA 
TGCATGTGAT GCCAAAGTAT TTCTGGATAA TATTTTATGA TCACTGAGGT 
TTTGCTACTG CGTATGGTCA GTTGAATGCC ACAAATAGTT CTTTCACTGT 
GATAAGATGA AGAAACTTGT ACAGAAGAGC CCCGTTTTTT AATCTTTTTT 
TTTTAACCTA GGAGTGCTTA TAGCTGACTT ATATACTAGT GATCCAAGAT 
GAATCATTGT AACTCAGTTA GATCTTCCAC ATTTTCTGAA AACAGTTGGA 
TTCAGTCCTT GAGAGTTGAT AAACCATGCT TGATGTGGCT TCTGATGAAC 
AGATTCAGAC ACACCTCAAA ATCTTAGTTT TTTTTTTTGT TTCATGGGAA 
CAACACTTGG CTAATTCAAG TTACAATACA AAGATTTCCC ACCACAAGGG 
ACGTACCAAC TTGATTTGAA TATGCCATGA GCCATGAAGA GTGCATACAT 
TTTGATGGAG AAGCTGTAGA TATATATATT CATAGCTTCA CCTTCCTATT 
GAGATCCAAA ACTAAAGTAA CTGCATTGCA ATAACCAAAT CCATCAATTG 
TTGTTGTGCT GGCATAAATC AGGCTAATTT CTGATTAATC TTTTGTACTA 
TTTGCAATGC TATTACTTGG CTTAAGAAAG AGCAAATAAA AAATGTGATT 
AAAAGACCTG ATGAGATGAT GAGAAAACGG GAAAAAATTA TAGGAGAAGA 
AAAACAATGT AGTCG

Gene models with high sequence identity

AT1G50440.3 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
E-value: 8e-93; Score: 338.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Zinc finger, RING-CH-type	1.9e-16
Gene3D	no description	6.2e-12
HMMPfam	Zinc finger, C3HC4 RING-type	3.8e-07
ProfileScan	Zinc finger, RING-CH-type	20.137
HMMPanther	MEMBRANE ASSOCIATED RING FINGER 1,8	3.1e-11
HMMPanther	MEMBRANE ASSOCIATED RING FINGER	3.1e-11

See the detailed result >

AT1G50440.3

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G11020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR