K14406

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14406

Determination of introduced cDNA(s)

J013037F04 - Rice Full-length cDNAs - Original: J013037F04

full reading [+] show sequence

GGCTGGCTGG CTCCACGTCG GACCCCATCT CTCTCCCACA CACACGCCTT 
CGCCTTCGCC TTCGCTGCAC CCATCGGAGC CACTCAATTC TCCCTCCCCA 
AGAACATCCC AATGGCCAAT TTGGAAGCTT CTACTACATG GAGCTCGTAG 
GCGAAGGAAT CCGCTACTTG TAGGCTAGCC AGAAAGATCA AGAAAGGCGC 
GCCATGGCTT TCCTCCTCCC CAAGCTCACC ACGCCGTCCT GCAAGTCGCC 
GCCGAGCCCG CTCAAGTCGC AGCTCGGCCT TCCCGGCGGC GGGAAGCTCC 
AGCCGGCGCA GGCCGTGGCA CCGAGCCACC TCAACCTCCT GCTCCTGCTC 
GGCGCCTCGC AGCAGGAGGC CGCCGCCGTC CCGACGCCCA AGAGCCGGAG 
CAAGAACGGT GGCGGCCGGA GCGGCGGCGG CGGCGGGGAG GACCCGCGGA 
GGTCGGATTA TTACCTCAAC CTTGGGACGG CGGTGCGCAC GCTGCGGGAC 
GACCTGCCGG CGGTGTTCGT CCGGGAACCC AACTACGACA TCTACCGTGA 
AGATATAACA TTCGTCGATC CGTTGAACAC TTTCCATGGA ATCGACAACT 
ACAAGACAAT CTTCTGGGCT CTCAGATTCC ATGGGCGCCT ACTCTTCCGT 
GAAATCGGGC TTGACATATC ACGCATTTGG CAACTGACAG AGAACTCGAT 
AGTTGTCCGG TGGGAGCTGT GGGGAACCCC GCGTGTCCCG TGGGAATCAT 
ACGGTTGCTT CAGTGGCACC TCGAGATACA AGGTCGACAG GAACGGGAAG 
ATTTACGAGC ACAAAGTCGA TAATTTGGCA CTGGACTTTC CCCGGCCAGC 
AGCCAAAGTA GGCAGCATTG CTGACATTGT CGTCGCCTCA TGCCCACCAA 
GCCCCAATTT GACGTTCTGG GACATGGTTG GGAGTACTGG TGATGGGTGC 
TCATGGGCAA ATCTCTACCA GGCGGTGGTG GAAACCGTGG AGCGGGAAGG 
CAATGATCCT GCTGGCATTG CCATTGAAGG TCTGCTTACT TGTTCATAGG 
ATGGAATGAG CTTCAGGGCT AGCTGCTTGG TAGTGAGCTT TCTTAGGGAA 
GATGTATAGA AGGTGGATAC ATAAATCATA ATGCTATTAA TCTTGGTACA 
CTGTAGCTCT AGAATAACAA TTTTAGATAC AATACATGGT AGATAACTAT 
GTCTCAGAAT CTTTGCTACG CATTCTAGAA TGTATCTACC AGTCTCTTAA 
GTCTCAAAAG TTAATGGCTA TTCTTAGCAG GTCTTTCAAT ATCCT

Gene models with high sequence identity

AT1G16320.1 [+] show detail - Uncharacterized conserved protein (DUF2358)
E-value: 1e-62; Score: 237.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF2358	1.5e-37
HMMPanther	MELANOCORTIN RECEPTOR 4	0.00018
HMMPanther	G-PROTEIN COUPLED RECEPTOR	0.00018

See the detailed result >

AT1G16320.1

Model type: Protein coding
Short Description: Uncharacterized conserved protein (DUF2358)
Computational Description: Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link: InterPro Scan - TAIR