K14649

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14649

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14649

Determination of introduced cDNA(s)

  • J033148M04 - Rice Full-length cDNAs - Original: J033148M04

    full reading [+] show sequence

    Nucleotide sequence: J033148M04 - full reading 
    GATCACACTC GCAAAAATGG TTGTCTACAG CATCCTCATC CTCTTTCTAC 
    TACTATTGAT CTTCTCCATC TCCAACTCCC AATCGGCGGC GCAGCCCAGC 
    GCCGACGAGC AAACACTACT CCTAGCAATC AAGCAAGATT GGGACAACCC 
    AGCTCCACTC AGTTCATGGA GCAGCACCGG CAACTGGACT GGTGTTATCT 
    ACAACAATAT CACAGGTCAG GTCACTGGCC TCTCCTTGCC AAGTTTCCAT 
    ATAGCCAGAC CAAACCCACC CTCCGTTTGT AGACTCAAGA ACCTAACCTA 
    CATAGACCTC TCTTTCAACA ATCTCACCGG TGATTTCCCC ACGGTGCTCT 
    ACGGTTGCTC AGCTTTGGAG TTCCTTGACC TATCCAACAA TCAATTATCC 
    GGCAAACTTC CGGACCGCAT TGACAGGCTA TCGTTGGGGA TGCAACACCT 
    CAACCTGTCC AGCAATGCTT TCACCGGCGA TGTGCCGTTG GCTATTGGAA 
    GGTTCTCGAA GCTCAAGTCA TTGGTACTTG ACACTAACAG CTTCAATGGG 
    AACTACCCGG GTGCCGCCAT TGGAGGCCTT TTGGAGCTTG AGACGCTGAC 
    GCTGGCGAAA AACCCGTTTG AGCCGGGTCC AGTCCCAAAA GAGTTTGGCA 
    ATCTCACAAA GCTGAAGTTG TTGTGGTTAT CATGTATGAA CATGACTGGG 
    ACCATCCCTG ATGATCTATC GTCACTGACA GAGCTCACAC TGCTGGACTT 
    GTCACAAAAT AAGATGCAGG GACAAATTCC CGAGAGCTTG ATCTGTCCAT 
    GAACAAGTTC TCTGGATCAA TACCAGAGGA CATTGCAAAC CTGAAGAAGT 
    TGAGATTACT ATTTTTGTAC TACAACAATC TCACTGGACC CATCCCGGCT 
    GGTGTTGGTA TGATGCCGAA CCTCACTGAC ATCCGTCTCT TCAATAACAA 
    GCTCTCTGGG CCCCTACCCG CGGAGCTTGG AAAGCATTCG GAATTGGGGA 
    ATTTTGAGGT GTCCAACAAC AACCTCTCTG GTGAGCTGCC GGATACACTT 
    TGCTTCAATA AGAAGCTCTT TGACATTGTG GTGTTCAACA ATAGCTTCTC 
    CGGCGTGTTC CCGACGAACC TTGGGGATTG CAAAACCATC AACAACATCA 
    TGGCATACAA CAACCACTTT GTTGGGGACT TTCCCAAGAA GATATGGTCA 
    TTCGAGTTGC TCACCAATGT CATGATTTAC AACAACTTCA CCGGCACTCT 
    ACCTAGTGAG ATATCATTTA ACATCTTAAG GATTGAGATG GGGAACAATC 
    GCTTCTCCGG TGCCCTCCCG TCGGCCGCCG TCGGTCTGAA GAGTTTCACG 
    GCGGAGAACA ACCAGTTCTC CGGTGAACTG CCAACTGACA TGTCTAGGCT 
    CGCCAACCTC ACCATGTTGA ACCTCGCCGG CAACCAGTTG CTCACCACTG 
    TCAAGATTTA TATTAACAAC TTCGCCAGCA CTCTACCAAG TAATAAGATT 
    GTTAGTAAGT CAAATGT

    Gene models with high sequence identity

    1. AT1G28440.1 [+] show detail - HAESA-like 1
      E-value: 7e-71; Score: 129.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Leucine-rich repeat 130
    HMMPanther PTHR23258 4.69998262513195e-45
    Gene3D G3DSA:3.80.10.10 1.90000694315261e-35
    superfamily SSF52058 2.39999798157265e-37
    HMMPanther PTHR23258:SF462 4.69998262513195e-45
    superfamily L domain-like 2e-43
    HMMPfam Leucine-rich repeat 0.026
    HMMPfam Leucine-rich repeat 0.0067
    HMMPfam Leucine-rich repeat 0.97
    Gene3D no description 4.1e-42
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.7e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.7e-06
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 7.9e-41
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.9e-41

    See the detailed result >

    AT1G28440.1

    Model type
    Protein coding
    Short Description
    HAESA-like 1
    Computational Description
    HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR