K14715

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14715

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14715

Determination of introduced cDNA(s)

  • J023009A17 - Rice Full-length cDNAs - Original: J023009A17

    full reading [+] show sequence

    Nucleotide sequence: J023009A17 - full reading 
    GGTACGGCAC GAAGCCATCG GCGTCCACCC ACCACATCGA CGCGACCACA 
    CTCCACACAA GCCATGGAGG CGTCACTCAC CGTCGCCGGC GCCGGCGCGG 
    CCGCCTTGTC TCTGCGGCCG CAAATCCGCC TTCGAATCAC CCAAGCGACC 
    CCTCTGATGC CCCCTCGGCG GCTCCAATCC GGACCCTCCA AGATCCAGAC 
    CTCCGGCGCC CGGGCCCACC TTGCGGCGGC CCCCGCGTCC ACGCCACCGG 
    CGGCGGGAGG CGGCCTGTAC TCGGCGGAGA CCTACGAGCT GACGGCGGAG 
    AACGTCGACC GCGTCCTGGA CGACGTGCGC CCCTACCTCA TCGCCGACGG 
    CGGCGACGTC ACCGTCGCGT CCGTCGAGGA CGGCGTCATC TCCCTCAAGC 
    TCGAAGGAGC GTGCGGCAGC TGCCCCAGCT CGACGACGAC GATGAAGATG 
    GGCATCGAGC GCGTGCTCAA GGAGAAGTTC GGCGACGCCG TAAAAGATAT 
    CCGCCAGGTG TTCGACGACG ATCAGCAGCC GGCGGAGCCA ACGCCCCAGG 
    CGGTGAACGG CCACCTGGAC ATACTGCGGC CGGCGATCGC CAACTACGGC 
    GGGAGCGTGG AGGTGGTCGC CGTCGACGGC GAGGACTGCC TGGTGAGGTA 
    CGAAGGCCCC GAGTCCATCG GGAGCGGGAT CAAGGCGGCC ATCAAGGAGA 
    AGTTCCCGGA CATCACCAAT GTGGTGTTCT TGCAGTGAGC TATCCAGAAA 
    ATTTTTACCT CATTGGCATG CATGAGTTAA AATGCACCAG TTTTCGATGG 
    CTGTTCATGT GCTAGTGAAC TTGTTCCGAT GTATGTTCAG GTGCAATCTT 
    TACAGTGTTC GCAGATACAA TACACAAACA GGGAAACGGA ATGATACTTG 
    CCTATTGTCA CCTCACTTGA AATAGTATTT GGATTTAGGG GAATAATCCA 
    TATGGATCGT CAAGTTAGAT GTTCAAATTA TAAGTTTTCG AAGGTAGCAA 
    GTAGCCAAGT AGGAAAAGCC CCTAATTGGC CAAGTATTAG CGATTACTAC 
    TACCTAGCAA GTCTGAAAAA TCTGGCTATT GGGGATGATC GAACTGTTAA 
    AAAGTTTGTC TGAATATTTG TCTGAGACTG AAATCTTAGC GAGAAGAGTC 
    CTTG

    Gene models with high sequence identity

    1. AT4G01940.1 [+] show detail - NFU domain protein 1
      E-value: 5e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 2.8e-46
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 4e-18
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 6.9e-22

    See the detailed result >

    AT4G01940.1

    Model type
    Protein coding
    Short Description
    NFU domain protein 1
    Curator Summary
    Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.
    Computational Description
    NFU domain protein 1 (NFU1); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 4565 Blast hits to 4561 proteins in 1155 species: Archae - 11; Bacteria - 2225; Metazoa - 159; Fungi - 160; Plants - 186; Viruses - 3; Other Eukaryotes - 1821 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR