K14805

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14805

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14805

Determination of introduced cDNA(s)

  • J013092H19 - Rice Full-length cDNAs - Original: J013092H19

    full reading [+] show sequence

    Nucleotide sequence: J013092H19 - full reading 
    GGTTCCAGGT GCAGCTGACG CGGTACGCGT GCGGCGGGCT GGTGATCGGC 
    ACGGCGTGCA ACCACCAGGT CTCCGACGGC CAGTCCATGA GCTTCTTCTA 
    CGTCGCGTGG GCCGCCGCCG TGCGCAGCGC CGGCGCGACC CTCCCGACGC 
    CGTTCGTCGA CCGCGCCGCC ATCGCGGTGC CCCGCGGCCC GCCGGCGCCG 
    GCGTTCGACC ACCGGAACAT CGAGTTCAAG GGCGAGAACA GCTGGACCCA 
    CTCCTACGGC TCCCTCCCCC TGGAGAGGAT CAGGAACCTC GCCGTCCACT 
    TCCCGGACGA GTTCGTCGCC GGCCTCAAGT CCCACGTCGG CACGCGGTGC 
    AGCACGTTCC AGTGCCTCCT GGCGCACGCG TGGAAGAAGA TCACGGCGGC 
    GCGCGACCTT TCGCCGGAGG AGTACACGCA GGTGAGGGTC GCCGTCAACT 
    GCCGCGGCCG CGCCAGCCCG GCGGTGCCCA TGGACTACTT TGGCAACATG 
    GTGCTCTGGG CGTTCCCGAG GATGAGAGTC CGGGACCTCC TCTCCGCCAG 
    CTACGCCACG GTGGTCGGCG TCATCCGCGA GGCCGTGGCG CGCGTCGACG 
    AGCAGTACAT CCAGTCGTTC GTGGACTTCG GGGAGGTGGC CGTCGGCGAC 
    GAGCTGACGC CGACAGCGGC GCCGCCGGGC ACGGTGTTCT GCCCGGACCT 
    GGAGGTGGAC AGCTGGCTAG GGTTCAGGTT CCACGACCTC GACTTCGGCC 
    GTGGCCCGCC GTGCGCGTTC CTGCCGCCGG ACCTGCCCGT CGAGGGGATG 
    CTCATCTTCG TGCCGTCGTG CGCGGCGAAG GGCGGCGTCG AGATGTACAT 
    GGCGCTCGAC GACCTCCACG TCGACGCTTT CAGGCAAATC TGCTACTCCA 
    TGGACTGATC ACGACTGTCA CAAAAATATT ACTCCTATGT GTACCATATT 
    GTTAGTTTGT TACAAGTACA ACAACAGCGT GCATATTTGC AAGATT

    Gene models with high sequence identity

    1. AT5G48930.1 [+] show detail - hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
      E-value: 1e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transferase 2.2e-41
    Gene3D no description 1.2e-13
    Gene3D no description 4.4e-43

    See the detailed result >

    AT5G48930.1

    Model type
    Protein coding
    Short Description
    hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
    Curator Summary
    At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.
    Computational Description
    hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR