K14850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14850

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14850

Determination of introduced cDNA(s)

  • J013088F16 - Rice Full-length cDNAs - Original: J013088F16

    full reading [+] show sequence

    Nucleotide sequence: J013088F16 - full reading 
    GTGGTGGACG AGACGAGTGA GAGGAGGAGA GCGGCCATGG CGGGGCGGAG 
    TGGCGGCGGC GGCGGCGGGA GCTCCGGGAA GAGCGGGACG GGGAGGATGG 
    TGTCGCTGCA GGAGTTCGTC TCGTCCATGG CGCCTCTCAT AGACCTGGAG 
    AAGGCGGCGG AGATATCGGC GGAGTCGGCG ACGAGCTCGA AGACCCTCGA 
    GAGGAGGGGT TGCGTCATGG CCAACCTCAA GTGCACCGAC GCCCAGACGG 
    GGCTGATGGG GAAGACGCTC CTGGAGTTCC AACCCAACAA GGGCGACGTG 
    CTTCCACCTC ACAAGTTTGG AACACACGAT GTGGTTGCTC TGAAGCCAAA 
    TAAGGCAGAT GCTGGATCTG CTGCTCTTGG GCAAGGTGTA GTTTATCGCT 
    TGAAGGATTC TTCCATTACT GTTGCCTTTG ATGACATTCC TGAAGATGGA 
    TTAAATAGCC CTCTCCGCCT TGAAAAGCTT GCAAATGAGG TGACATACCG 
    CAGGATGAAG GATGCACTAG TTCAACTTAG TAAGGGCATT CAAACAGGCC 
    CTTCAGCAAA CCTTATTCCT GTTTTGTTTG GAGAAAACCC ACCTATGAGT 
    TCCAAGGATG TTGCGAAGTT CAGTCCATTT AACAAGAATT TGGATGAGTC 
    ACAGAAAGAT GCTATCTCGA AGGCCCTCAG GTCAAGGGAT GTTTTCTTGC 
    TTCATGGACC TCCTGGCACT GGGAAGACAA CAACTATCAT TGAGATAATA 
    TTGCAGGAGG TGAAACGTGG ATCAAAGATT CTTGCTTGTG CTGCTTCTAA 
    CATCGCCGTG GATAACATTG TTGAGCGACT CTCCCGATAT AGAACCAAAT 
    TGGTGAGGTT AGGCCATCCT GCTCGATTAC TACCCCAAGT GTTGGACAGT 
    GCTCTTGACG CACAGGTATT GCGAGCAGAT AACAGCAGCT TAGCAGGAGA 
    TATTCGCAAA GAAATGAAGG TGCTTAATAG CAAATTGCTG AAAGCTAAGG 
    ATAAGAATAC AAAAAGGGAC ATCAGGAAAG AGCTCAGAAC CCTTGCCAAA 
    GAAGAGAGAA AACGACAACA GCTTGCTGTT GCTGATGTGA TAAAAAATGC 
    AGATGTTGTA CTGTCGACTT TGACTGGTGC ATCTTCCAAA AAGCTAGATG 
    GTATTACATT TGATTTGGTC ATTATTGATG AAGCTGCTCA GGCACTTGAG 
    ATGGCATGTT GGATAGCCTT ATTGAAGGGT CCAAGATGTG TGCTTGCTGG 
    AGACCATCTT CAACTTCCTC CGACTATCCA AAGTGCTGAG GCTGAGAAGA 
    AGGGGATGGG AAAGACACTC TTTGAACGCC TTACTGAAGC TTATGGAGAT 
    CAAATTACAT CCATGCTCAC TATCCAGTAC AGAATGCATG AGCTCATAAT 
    GAATTGGTCA TCTAAAGAAC TTTATAATAA CAAGATCAAA GCTCATTCTA 
    GTGTTGCTGA TCATATGCTC TATGACATTG AAGAAGTGAA AAGATCTTCT 
    TCCACAGAGC CGACTATCAT ACTAATTGAC ACTACTGGGT GTGACATGGA 
    AGAAGTAAAA GATGAGGAGG AGAGCACTAT GAATGAGGGT GAGGCTGCAG 
    TATCCATTGC TCATGCCAAG CTGCTTGTTG AGAGTGGTGT CCGTGCATCT 
    GATATTGGAA TAATTACACC TTATGCTGCA CAGGTAACCT GTCTGAAGAT 
    GATGAGAAAC AAAGATACTA AACTGAAGGA CTTGGAGATA TCGACAGTTG 
    ATGGGTTCCA GGGTAGGGAG AAAGAAGCCA TCATCATTTC AATGGTCAGA 
    TCCAACTCAA AGAAAGAGGT CGGATTCTTA AGTGATCATA GACGAATGAA 
    TGTTGCTGTA ACACGAGCCA GAAGGCAGTG CTGCCTAGTG TGCGATGTAG 
    AGACCGTAAG CAACGACAAA TTCTTGAAAC GCTTGGTTGA GTACTTTGAG 
    GAGAACGGGG AGTACTTGAG TGCATCAGAA TACCAGAGCT GATGACTTGG 
    GGTGTTAACC CTTAACCGTG ATAGCCCGTG CTTATCGCAA AGATAGTGAA 
    GAGATATATC CAAACGATGC TTGTGATAGG AACATCGTGC ACTTCAAACT 
    GGTGCAATAT GGCCAATGGA GATACTGTCA TTCGACTTTT ATAGATTGGA 
    AACAGATCGC TGTGAGACTG AACAGATAAT TAGCTCAGGA GTGGATCAAT 
    TTCGTCTTGA CTGGCCCTGT TCTGGTCTCT TCTTCTGTGG CTTATGGAAA 
    TGAAACCTCA GTTATGTGTT TTTATATGTC CGTTCTTTCA ACTGATGTAC 
    AATGATAGAA GACTAATTTT ATTCATCCAT GTGCAAATCT ACCATAGTTT 
    TTTGCATGGA GTTTTGAAAC TTGGGTCCAC AAAAATAGTA ATAATAGGAT 
    AGGAGGTTGA CTGTACTGAA CTTCGCATGA TAATTAATCT GTATCTCATC 
    C

    Gene models with high sequence identity

    1. AT2G03270.1 [+] show detail - DNA-binding protein, putative
      E-value: 0; Score: 916.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr DNA helicase, putative 2.1e-167
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-36
    HMMSmart DEAD-like helicase, N-terminal 4.4e-05
    HMMSmart ATPase, AAA+ type, core 6.9e-06
    HMMPanther DNA-BINDING PROTEIN SMUBP-2 2.7e-190
    HMMPanther DNA2/NAM7 HELICASE FAMILY 2.7e-190
    Gene3D no description 0.00034
    HMMPfam Restriction endonuclease, type I, R subunit/Type III, Res subunit 4.6e-07

    See the detailed result >

    AT2G03270.1

    Model type
    Protein coding
    Short Description
    DNA-binding protein, putative
    Computational Description
    DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR