K14914

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14914

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14914

Determination of introduced cDNA(s)

  • J023140F24 - Rice Full-length cDNAs - Original: J023140F24

    full reading [+] show sequence

    Nucleotide sequence: J023140F24 - full reading 
    TGCTGCTGGT GTGGGGCTGT CATACTCCAA GAATACTTCG GATTATAACA 
    CCGGGGACCT CAAGACTGCC GCGGATTCGC ATACTTTTCT TCTGAAGTGG 
    TTTCAGCTGT ACCCTGAGTT CCTGAGCAAT CCATTTTACA TAGCTGGGGA 
    GTCGTATGCT GGGGTTTATG TTCCTACTCT TTCGCATGAA GTTGTCAAAG 
    GATTACATGA TGGAGTGAAG CCTACAATAA ACTTCAAGGG CTACATGGTC 
    GGAAATGGTG TTTGCGACAC TGTTTTTGAT GGTAATGCTC TTGTGCCATT 
    TGCTCATGGA ATGGCTCTAA TTTCAGACGA TATATACCAG GAAGCTCAGA 
    CTGCATGCCA CGGAAACTAC TGGAATACTA CCACTGATAA ATGTGAAAAT 
    GCACTCTACA AAGTCGATAC GTCAATTAAT GACCTAAATA TTTATGACAT 
    TCTTGAGCCA TGCTACCACA GCAAAACTAT CAAGAAAGTG ACCCCAGCAA 
    ATACCAAATT GCCCAAAAGT TTCCAACATC TTGGTACAAC TACCAAGCCC 
    CTTGCTGTAA GAACAAGAAT GCATGGGCGT GCTTGGCCTC TGAGAGCTCC 
    TGTGAGAGCG GGGCGTGTGC CATCCTGGCA GGAGTTTGCC AGAGGATCTC 
    GCCCCAGTGG AGTTCCTTGT ATGAGTGATG AAGTTGCAAC AGCATGGCTG 
    AACAACGATG ACGTCAGAGC AGCAATTCAT GCCCAACCAG TAAGCTCAAT 
    TGGCTCGTGG CTTATATGCA CCAACGTGTT GGATTTCATC CATGATGCTG 
    GAAGTATGAT CAGTTATCAC AAGAACCTCA CAGGCCAGGG TTATCGTGCT 
    TTCATATACA GTGGTGATCA TGATATGTGT GTACCTTATA CCGGGACTGA 
    AGCATGGACC AGATCTTTGG GCTACGGAGT TATTGATTCA TGGAGACCGT 
    GGCACCTGAA TGGCCAAGTT TCTGGGTACA CCCAAGGATA TGAACATGGC 
    CTCACCTTTG CTACCATTAA GGGTGCTGGG CACACTGTTC CTGAATACAA 
    ACCACAAGAA TCATTGGCTT TCTATAGCCG CTGGCTTGCT GGTTCTAAAT 
    TGTAAATGCT TGTGAATCCG ACATCCAATA ATGGGAAGCA TACATATCCA 
    TACAGCCATG AATCAGATAA AGGTTGATAC AAAGATAATA TAAAAAAACT 
    ACAAACCAAT TTAGAAAGCC ACATTTATTT CAGAATAGTT GGTGCCAACA 
    CCATGTTGTA TGTTCTTTTA TGCAAACAGT AGATCATTCA TCATTATTTG 
    TGGAAGCTTA CTGTGCTGTA ACATCAAAAT GTCAATCCTT TTTTCTGATA 
    TTTTGTATTC TCAATTTCTG ATTGTCAATC CAAAGCC

    Gene models with high sequence identity

    1. AT4G12910.1 [+] show detail - serine carboxypeptidase-like 20
      E-value: 3e-134; Score: 475.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    superfamily alpha/beta-Hydrolases 4.1e-85
    HMMPfam Peptidase S10, serine carboxypeptidase 4.6e-92
    HMMPanther SERINE CARBOXYPEPTIDASE I (PLANTS) 8.3e-181
    HMMPanther Peptidase S10, serine carboxypeptidase 8.3e-181
    Gene3D no description 6.6e-86
    FPrintScan Peptidase S10, serine carboxypeptidase 1.7e-17
    FPrintScan Peptidase S10, serine carboxypeptidase 1.7e-17

    See the detailed result >

    AT4G12910.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 20
    Computational Description
    serine carboxypeptidase-like 20 (scpl20); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 21 (TAIR:AT3G25420.1); Has 4118 Blast hits to 3857 proteins in 425 species: Archae - 0; Bacteria - 294; Metazoa - 699; Fungi - 932; Plants - 1620; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR