K15043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15043

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15043

Determination of introduced cDNA(s)

  • J013025N09 - Rice Full-length cDNAs - Original: J013025N09

    full reading [+] show sequence

    Nucleotide sequence: J013025N09 - full reading 
    GATCAGTTTG CCCACACAGC CGCCGCTTCC TCTCCCAGGC CGCGTGCACC 
    GTCGCGGCCG CCTCCCCACG CCGTCGCCCT GCTCCCTTGC CAACTATTCC 
    CCCGCTGGCC GCCGCTGCCC CATGCCACCA TACCTCGTCT TCAAGCGACG 
    TCGATTCTAA TCATCATCAT CCTTCTGCCG TTCTTCAACC ACTTCCGAGG 
    GGAAACGGGC TGAAGTGGGG AGATGGTGCT GCGGCGGGCT ACTGCGGCGG 
    TGGGCGATTG CCCGAAGAAG GTGGCGAAGC TGGTGGACCT GGTGAACCTT 
    CCGACAGCCC TGAGGGAGTT CGCGGGGGGC CAGTCCCAGA TGTCCCACCT 
    CTCTTTCTTC CTCCGCGTCT GGTCACATAT CAAGAGCAAC AACCTCCAGG 
    ACCCATCTAA TAGGAACATT GTAAACTGTG ATGACAAGCT GAAGACTGTA 
    TTATTGGGTA GGTCTAAAGT GGAGCTCTCT GAACTCCCAA TGCTTGTCAA 
    GCTGCATTTT CCCAAATTTC AAAAGTCATA AGAATATAAA AGTCACAGCT 
    TTTAATAACT AAATTTTGTG GAAGCTGGTT TTATTTCTTG TATCCTCAGA 
    TAAGCAGCAA AGTCAATGTG AATTTGTTTC CAAAATGCCC GTTACTATCA 
    GCTAACATGT GTGCAATGAA CGATGCAGTT CTGTGACTCT TGAGTTCTGC 
    CCACTCGATA TATGTAATTT GTCATGTTAG TATCTTGTTG AAGAAACAGA 
    ACGATAGAAG GAAATCTGTG CTGCATGATT GCTGTCACTG TCTTTG

    Gene models with high sequence identity

    1. AT4G26810.2 [+] show detail - SWIB/MDM2 domain superfamily protein
      E-value: 4e-30; Score: 128.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SWIB/MDM2 domain 2.3e-18
    HMMSmart SWIB domain 0.00015
    superfamily SWIB/MDM2 domain 1.7e-20
    Gene3D SWIB/MDM2 domain 3.8e-09

    See the detailed result >

    AT4G26810.2

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain superfamily protein
    Computational Description
    SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR