K15234

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15234

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15234

Determination of introduced cDNA(s)

  • J033124H03 - Rice Full-length cDNAs - Original: J033124H03

    full reading [+] show sequence

    Nucleotide sequence: J033124H03 - full reading 
    GACTCTTCGC TCTCGCGTCG CGCACGACAC GACCGAGCCA GCAAAGCCGC 
    CCATCCGCCA TCCCGCCGCT CCTGCAATCT ACAGCCGCGT CGCCGCTTGT 
    CCGCCTGCGC TCGTTCTCGC TAGGGTTCGG AAGGGGGAGG GTGGGGATCG 
    CCCGGCGATG GACTGGAGCG CGGTGACGGC GGAGGACCTG GTGGACGCGC 
    TGCGGGAGGT GGACTGGTCG ACGCCGCCGC GCCCCGTGCC GGAGTTCTTC 
    TCCCGCTTCA CCGTCCCCCG CTCCTACTCC AAGTGGACCA GCCGCCTCAA 
    GTGCAACCTC TACTACTACA GGACAAATTA CTTCATCTTG ATCATGTTCA 
    TCCTTGGGAT AGGCTTCATT TGGAAGCCGG TTGCTATACT TGCAGCCTTT 
    ATGACTGGAA TCAGCATTGC ATTTCTTAAT GACAGCTTTG CAGTCACTTT 
    CAATGAGAAA GTCACGAGGA CTGTCAGACA ATTTTCACCA CATTTAGCTG 
    CAAAAATGAG GCCACCAATA ACCCCTGTTC TTCGTGGTAG ACCAAGTTCA 
    AAGAGGTCGA TTCATATTTG TGGGCGACCT CGCTGGCTAT TTGTGCTGTT 
    ATTTTCTGCA GTTAGTTGCA TGCTCTGGTT GACTTCCTGC AGTCTCCTCA 
    CAGTTCTATG GGCCCTTTTA ATTGCTATCT TTGCAACTCT GCTTCATGCT 
    AGCTTCAGAA CACCTAATCT GAAAGCACGT CTGAATACAT TCAGAGAAGA 
    ATTCCGAGCT GTTTGGAGGA ATTATAGTGA GCTTTAAGGT TCATGTGGTA 
    AGAAGTGCTT AGTGCTGAAA CTTCGTGCTG TTTGTGAATT GTGTTTGTGG 
    GAGATACCAA GATATGAACA ATGGTGACAG GCAGCTGCGT TCTATTGTGA 
    TTACTTGCTC GTTTTGGAGG TGGGCCTTGA CTGTCTAAGT ACATGATGAT 
    GTTACACTTG GTACGCCACC TTCCAAATCA CTATAATTGT TCACATGGGA 
    TTCTCCCTAA CCAAGCATTG GAAAAAGAAC AGCATGTAAA GGATGTAAAC 
    AAGTATTCTA ATCAACACAG CATATATTGT TTGTTGAAAT GTTTGTTTCA 
    TGTTTCC

    Gene models with high sequence identity

    1. AT5G02040.2 [+] show detail - prenylated RAB acceptor 1.A1
      E-value: 1e-80; Score: 297.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PRENYLATED RAB ACCEPTOR 1-RELATED 6.5e-06
    HMMPfam Prenylated rab acceptor PRA1 2.6e-42

    See the detailed result >

    AT5G02040.2

    Model type
    Protein coding
    Short Description
    prenylated RAB acceptor 1.A1
    Computational Description
    prenylated RAB acceptor 1.A1 (PRA1.A1); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G11402.2); Has 236 Blast hits to 236 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 12; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR