K15534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15534

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15534

Determination of introduced cDNA(s)

  • J023069O21 - Rice Full-length cDNAs - Original: J023069O21

    full reading [+] show sequence

    Nucleotide sequence: J023069O21 - full reading 
    AAGATCGTGC GCCTGCTCCG CGACGCCGGC GCGCGCGAGG TGCACATGCG 
    GATCGCCAGC CCGCCGGTCA TCGGCTCCTG CCTCTACGGC ATCGACACGC 
    CCAGCGAGGG CGAGCTGATA TCAAACAGGA TGGACCTCGA GGGAGTCCGC 
    AGGGCGATCG GCTGCGACTC CCTCGCGTTC CTCTCGCTCG ACAAGCTCCA 
    CACCATCTAT GGCGACGAGG CGCATGAGCT CTGCGACGCC TGCTTCTCGC 
    GGAATTACCC GGTGCTCCCC ACCGTGCCGG AGCCGGTGCC GGAGTTGGTG 
    TCCGCCTTCG AAGACTGACA TGAACTCGCA ACTAGGGGAA GTGGCTCTAC 
    TATACTCTGC AATCTGCATA TGCTTATATA GAAATTTTAG ACTCAATTTT 
    GGGGCTTGGT GGCAATATTT GTCCTTGCAA TTGCATTCAT CAATCTGAAT 
    TTTGGGAGTA AGGTTTAGCT ATTGGATATT GATCGAGCTG ATACGGTTAA 
    GTTTGATCTG TCTATTCATC TATTGTATTG CCAATGCCAT CATGGTGATG 
    ATGATGAACG AGATAATTGC TTCAATGACA CATGGTGAAA AAGTTGCCTT 
    TTTGGTATGT

    Gene models with high sequence identity

    1. AT4G34740.1 [+] show detail - GLN phosphoribosyl pyrophosphate amidotransferase 2
      E-value: 1e-26; Score: 116.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF53271 3.8e-19
    Gene3D G3DSA:3.40.50.2020 7.09999884211197e-12
    HMMPanther Amidophosphoribosyl transferase 8.40001703163729e-31

    See the detailed result >

    AT4G34740.1

    Model type
    Protein coding
    Short Description
    GLN phosphoribosyl pyrophosphate amidotransferase 2
    Curator Summary
    Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.
    Computational Description
    GLN phosphoribosyl pyrophosphate amidotransferase 2 (ASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLN phosphoribosyl pyrophosphate amidotransferase 1 (TAIR:AT2G16570.1); Has 21535 Blast hits to 21523 proteins in 2920 species: Archae - 630; Bacteria - 12403; Metazoa - 419; Fungi - 318; Plants - 251; Viruses - 17; Other Eukaryotes - 7497 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR