K15735

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15735

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15735

Determination of introduced cDNA(s)

  • J023134A15 - Rice Full-length cDNAs - Original: J023134A15

    full reading [+] show sequence

    Nucleotide sequence: J023134A15 - full reading 
    GCCATGCCTT ACTTTTTTTT CTGTAGGTTT CTCCTCACAT TCTTAACTAT 
    GGTCGGGTAG ATAAAGTTAC GAAATCTTTG AAATTTCCTC TGTCTAGACC 
    ATGCAAAGCA GGGGAGCAAT GTTTTCTCAG TTATGGGAAG CATCCAGGAT 
    CTCATCTTAT CACTTTCTAT GGTTTTCTAC CAAGAGACAA CCCTTATGAT 
    GTTATACCTT TAGATCTTGA TACATCTGTG GATGAAGAAG ACAGTTCATC 
    TCCGTCCGTA ACTACAAGCC AAACCAGTCA TATGGTACGT GGGACATGGC 
    TGTCCAGATT AAGAGGACCT CCGACGTATG GGCTGCCTCA TCGCTTGGTA 
    TCCCATCTCC ATGCCATTCT AGGTTGTAAT CAGAACGAAT CCGCTCCAGA 
    GGCTGATAAC AAGGAAAATG ACAGGATGGT GCTCGAAACA CTCCTCTCCA 
    TATTTACTCC CATGCTTGAA GGATTAGGCG AACCAGATGA CTTCGACCGG 
    GAGAACGCAT GTTGGGACGT CAATCTCGCA CTGGACTACA AAGATCTACA 
    AAGAAGGATA GTTTTGTCCA TTGTTACTTC GTGTACCTCA GGCTTGGCCA 
    TGCTTGATTC CTAGTCCGAA CTCTTTAGTG CTTCATCATT GGATGTGCAA 
    GACCACAATT GGAGTTTGTT GGGAGTGACT CAAGCTGACA TGTGGATGGT 
    GGAGCTGTTG CACATGGGTT ACCTGCAACT GACTGCAAAT CTGTTCTTTC 
    CTGGATAGGG ATCCAAGGAC CAGTATGGCA TTTGACCACC AGTCCCAAGT 
    GAAGATGCTC AGCTCACAGC ATCAGGTGTC TGATCCGATG ATTACGCGAA 
    ATCCAGTCAT CGATCTGTGC CCTCTGTGGC TTGAGATTTA AGTAAGTTGC 
    CCCTGGTTGT TACTGCAAAC CTGCTGCTTT TGGTGGAAGA AAGCTACTTC 
    TGAACTAATT TATTGGGGAT GGAGTAATGT CTCTTCGACC CATAACGCCG 
    ACATTTCAGC TTATTATTTA TAAGATCATA TTGCTGATCA TGGAACTGCA 
    CATGGAATTT CTGCTAAATT AGTTTTCTCC CATGTGGTCC ATATGCTAGA 
    ATAACTGAAC ACTGCATAAA AGGATGCTCC TTGAGTTGTG TGCTGAACCT 
    GCTAGTTTTT TTCCCTTTTC TTTTCCTTGA GTTGTGTACT GAACCTGCTA 
    GTTTTTTATT TTTCTTTTTT TTCCTTGAGT TATGAACTGT GCCTGTTACT 
    TCCTCTATTT CATATTATAA GTCACTTTGG GTTTGCGCC

    Gene models with high sequence identity

    1. AT2G18850.1 [+] show detail - SET domain-containing protein
      E-value: 6e-43; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.90.1410.10 1e-05
    HMMPanther PTHR13271 3.69999844802221e-07
    superfamily SSF82199 2.4000006166714e-06

    See the detailed result >

    AT2G18850.1

    Model type
    Protein coding
    Short Description
    SET domain-containing protein
    Computational Description
    SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 858 Blast hits to 854 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 205; Plants - 298; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR