K15929

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15929

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15929

Determination of introduced cDNA(s)

  • J013002B15 - Rice Full-length cDNAs - Original: J013002B15

    full reading [+] show sequence

    Nucleotide sequence: J013002B15 - full reading 
    GGATAAGCCA CCACCGCCAC CGGAGGAGGA GCTCTATTTA TGCCCTCGCG 
    GCGGCGCCTC CTCTCCCCGC ACCCCCCCGC CTCGCCGCTC GCCACCGCGC 
    CCCAGAGGCT GGGAACTTCG AGGAGGAGCA GGATCCATGG AGGGTGGAGG 
    CGCAAGAAAT GGCTCGACGA CCGGGGCGGC GCGGACAGGG GGGAGTGGGG 
    GTGATGCTGC TGCTGGTGGT GGTGGTGGCT CCGCCGGGAA CGGGGAGCCG 
    CTGCCCCCTT GCTGCGTCAA GGCCAGGGCG GCGGCGCCTG AATCCGAGGC 
    CAAGTGCCAC GCCACCGTGG TGTCCGGATG GTTCACCGAG CCCCGCTCGC 
    GCGGCGGTAA AACGAGCAAG TGCAGTATTA CAATAACCCG ATGTGGCCAG 
    GAGAGGCCCA TTCACTGAAA GTTGAGAAGA TCTTGTATCA GGGGAAGTCA 
    CCATACCAAG AAGTTTTAGT TTTTGAGTCC TCGTGTTCGG CTTCATGTTG 
    GTGATGCTGT GGAGTTCTTA AGGAATGCTC CTGAAGGGAC ATATGATGCT 
    ATTATTGTCG ATTCATCAGA CCCGATTGGG CCTGCCCAGG AACTTGTGGA 
    GAAGCCATTT TTTGACACAA TCGCAAGAGC TTTGAGGCCT GGTGGTGTTC 
    TTTGTAATCA GGCTGAGAGC ATGTGGTTGC ATACGCATCT TATCCAGGAC 
    ATGCTTTCGA TCTGCCGTGA GACATTCAAG GGTTCTGTCC ACTATGCCTG 
    GACGAGTGTC CCGACATATC CCAGTGGTGT GATTGGGTTT CTGCTATGTG 
    CCAAAGAAGG TCCACCAGTC AACTTCCTGA CTCCTGCAAA TCCAATTGAA 
    AAACTAGAAG GAGCTATGGA AGCAGGAAGG GATATTAGAT TTTATAATTC 
    AGAGATGCAT AGAGCCGCAT TTGTTCTCCC AACCTTTGCA AGGAGAGAGC 
    TAGAGGCGTA TTGTACTACC GTTGAAAGGG AACAACAAGA AGAAACAACG 
    GCCGAGCCTC TGAAGATGAA CATTATGCAG AACAGTGAAA TTCTTACTGC 
    TTCCTAGATC AGGGTTTTTG CCTGCTCACA TCATTGGATA ATCAAGAAAC 
    CATTCCTTCA CCTTACAGCG TTGGACTTGA CCTAGTATTG TATTATTATT 
    AAATACAGTA GCATGTAGCG ATTGCATTAA GCAGTGGACT GCATTACGAC 
    CAACGCATCA CCGAGGCTTA CGGCTTGTAA TCCATATTGT AGACTGTTGA 
    AATGAGTGAG GCTTAATAAT AAAAAAGGAG AGATGAGGAT CTG

    Gene models with high sequence identity

    1. AT5G53120.6 [+] show detail - spermidine synthase 3
      E-value: 3e-70; Score: 262.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 4.3e-38
    ProfileScan Spermine synthase 47.164
    Gene3D no description 6.5e-42
    HMMPfam Spermine synthase 3.6e-31
    HMMPanther SPERMIDINE SYNTHASE 1.4e-99
    HMMPanther Spermine synthase 1.4e-99

    See the detailed result >

    AT5G53120.6

    Model type
    Protein coding
    Short Description
    spermidine synthase 3
    Curator Summary
    encodes a novel spermine synthase and is a paralog of previously characterized spermidine synthases, SPDS1 and SPDS2. SPDS3 forms heterodimers with SDPS2, which in turn forms heterodimers with SDPS1 in vivo. The gene does not complement speDelta3 deficiency of spermidine synthase in yeast but DOES complement speDelta4 deficiency.
    Computational Description
    spermidine synthase 3 (SPDS3); CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 1 (TAIR:AT1G23820.1).
    Link
    InterPro Scan - TAIR