K16050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16050

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16050

Determination of introduced cDNA(s)

  • J013100N05 - Rice Full-length cDNAs - Original: J013100N05

    full reading [+] show sequence

    Nucleotide sequence: J013100N05 - full reading 
    TCTTTGGAGA TTGGACCCCG CCGCATCTCC ACGTCTCCTT CCGCCGCCGG 
    AGGGGGATCC GACTGCGTCG GCGGTGGGGG CGAGCCTGGA ATCCCTCCTC 
    GCCGCCAAGG GGGTCCAGAC CCTCACCCTC TCGTTCTGGG ACTACAGCGA 
    TGTCAATGTG GAGTACTACA CCCTCCACCC CGCCATCTTC GCCTGCGGCC 
    AGCTCACCAG CCTCCACCTC GAGCGCTGCT TCCTCCCCAC CGCGCCCGAG 
    GGCTTCGGAG GGTTCCCGAA TCTCACCTTG TTGAGCCTCG TCTACGTTGG 
    CCTCCCGGAG AATGGGGAGA GGAAATTGGA GGCCATGATC CGCATGTCCC 
    CGTCGCTTGT CTCGTTGGAG CTTAGCAATG TTGAGGTTAC TAATGACGAC 
    TTTGAGGATT GGATAATTCA GGCTCCGAAT CTCGAGAGGC TGACTATTAC 
    TTCCGATATC GATTACGGAT GGCAGATCCA GGATCTTCCA TCTATACAAG 
    ATGCTAATAT CAATATTGAA GACTACTCAA TTGATCGCGA TTTCGTCAAG 
    CTTCTCACAT CTTTGGCCCA AGTCGGGGAG CTCGAGTTGT TTATACCGTC 
    CGCAGATGGT AATGTTCTAG AGGGAATTTC ATGTTCTTTT CAGAAATTAA 
    GGAGTTTAAC TCTTCATACA AACTTCTACA AAGCATCTAG CATTTTATCT 
    ACATTTGGTT TACTCACGAG AGCTCCCAAT CTTTTACATC TGGAAATTGA 
    GATCACAGAT CATGAGAATC AGAGCGATGA AGTAGATATA GATTTTTTAA 
    ATGCACTGTG GACCAACAGT CTTTTTGCAA ATCTTGATTT TGTTAGCATA 
    AAGAGTGCCA CTTGCTGGTC AAATGAGATG CGCTTTATTG AATTTGTTCT 
    ATCCAAAGCA AGATTACTTG GTGAATTTTA TATTTATCAT GATGATACTG 
    GTTCATACTC GAAGCCTAGA GAAGAGGCAA TTATTGAGTT AGCAAAATAT 
    AAAAGAGCAT CACCAAAGGC AAAAGTATTC TTCAGGGATA TGGAGGATAC 
    ATGGCTGTAC TCATGAGAAT CGAGACTCAG AGAAGCACTC TTTGCACCTT 
    TGATCCACAG GAGGTTCACA TGGTCAATTA TACCAAGTTA CTCATACTTC 
    CGTACATTCC TGAAAATGCT TCAGATAATC ATGGCGTGAT TATTCATTAT 
    CTTTCTCAAT GGAAAGTCGT CTCTTGAATA AACATGAGTG ATTACAGCAC 
    TCAGCTTCGA TCGATTGGCA AATCTGTATA TTTACTGGAG ATGGGGCATT 
    CCATCCTCCT CGTCGTAGTT GTAGCACAAT CTTACAAGTC GCATGAGTTG 
    ACCCTATACC GCAAACTATA TACTATATGT TGGTTGTGTG C

    Gene models with high sequence identity

    1. AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 1e-06; Score: 52.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G13570.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR