K16108

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16108

Determination of introduced cDNA(s)

  • J023058G03 - Rice Full-length cDNAs - Original: J023058G03

    full reading [+] show sequence

    Nucleotide sequence: J023058G03 - full reading 
    GCGTAACAAA TGGATCCCTA AGAAGTCATC TAACCGAGTG GAGGAAGCGT 
    GAGATGCTAA AATGGCCCCA ACGTGTTTCT GCTGCCATTG GTGTCGCCAG 
    AGGGATCCAG TTTTTGCATG ATGTGACTGC TCCGGGCATT GTACACAATG 
    ATCTAAGCAT CGAAAATATT CTTCTGGACA AGACACTCAC TTCCAAAATC 
    AGCAACTTTA ACCTCCCGTT GATATCAACT AGCAAGAATG GCAAGATATT 
    CTCAGAATCC CCCTTTGCCA CATCTGAAGA CAATGATCTC GGCAGCGTGC 
    CAAGCACAGA ACAAGGGGAC AAGGATGACA TTTACCAGTT CGGCCTAATT 
    CTTCTGGAAG TAATCACAGG CAAGCCAACA GAGTCCCCAA AAGACCTGGA 
    CTCCCTGAAA ACTCAGATAA GTGAAGCTAT AGCTGAAGAC CCAGATTTAT 
    TGAAAGACAT GGCGGACCCG ACGATCCGCG GAACGTTCGC CGTCGAGTCG 
    CTGAGCACGG TGGCCGAGAT AGCACTCAAT TGCATTGCCA GTGACACAAG 
    CAGCCGACCC TCCATTGAGG ACGTCCTCTG GAACCTGCAG TACTCCATGC 
    AGGTGCAGGA CGGTTGGGCA AGCAGCGAGA GCCTGAGCCT GAGCACCAGA 
    TCACAGGGAT GAGTAAGCAC AAAAAAGAGG GGCAATTTCA CTTCTCCGGG 
    TCAAGCAAAA AGATGCAATT TCACTTTCAG ATTGGTTGCG ATTTTGCTGT 
    AAAAGGGTGA GTTTGTTGTG CTGTTTCGTT CCTTTTCCTG CGATTTTGCT 
    GTGGGAGAGG TGTGTGTGTG TTCGTCCTTT TCCTTGTGTA TAGAAGTTCT 
    CTTGTTTTTT TCCTCTTGTT GCTCAAAGTT GTAACATTCC AGCTAGAGCA 
    ATTAAGACCA AAATTATTGG ACC

    Gene models with high sequence identity

    1. AT1G14390.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 4e-59; Score: 225.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23258:SF165 6.49997950541775e-44
    HMMPanther PTHR23258 6.49997950541775e-44
    PatternScan Tyrosine-protein kinase, active site 0
    Gene3D G3DSA:1.10.510.10 2.19999900980727e-21
    superfamily Protein kinase-like domain 1.99999636034536e-23
    HMMPfam Serine/threonine-protein kinase-like domain 2.80000000000001e-12
    ProfileScan Protein kinase, catalytic domain 0

    See the detailed result >

    AT1G14390.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G02780.1); Has 96517 Blast hits to 51613 proteins in 1566 species: Archae - 24; Bacteria - 6061; Metazoa - 18233; Fungi - 1323; Plants - 64840; Viruses - 89; Other Eukaryotes - 5947 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR