K16138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16138

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16138

Determination of introduced cDNA(s)

  • J033029E14 - Rice Full-length cDNAs - Original: J033029E14

    full reading [+] show sequence

    Nucleotide sequence: J033029E14 - full reading 
    TGGGCTCGCA CATGGTTCGC CGCCTTTCGG TGAGATCCCC GCGGCTGCAG 
    CGAGCTCGCA GGCCGCCGCC TTCCGCGCCG CCGACCACCG CGCCCATGGA 
    CCCCCCCTCG CCGCCGCCGC CGCCGCCATA TCCTCCTGCT GCTGCTGAGG 
    GCGGTCCGGC AGCGGATAGC CAGGCCGCTG AGCTGCCCCG GCTGACTGTG 
    ACGCAGGTGG AGCAGATGAA GGTGGAGGCG AAGGTGGGCG AAATCTACCG 
    CGTCCTCTTC GGCAACGCGC CCAACGCCAA TTCCCTCATG TTAGAGCTGT 
    GGCGTGAGCA GCATGTTGAG TATTTGACGA GAGGGCTGAA ACATCTTGGA 
    CCAAGCTTCC ATGTGCTCGA TGCCAATCGA CCTTGGCTGT GCTACTGGAT 
    TATTCATGCA CTTGCTCTGT TGGATGAAAT ACCTGACGAT GTTGAGGATG 
    ATATTGTGGA CTTCTTATCT CGATGTCAGG ACAAAGATGG TGGTTATGGC 
    GGAGGACCTG GACAGTTGCC TCATCTCGCT ACAACTTATG CTGCTGTAAA 
    TACACTTGTA ACTATAGGGA GTGAAAGGGC ACTATCATCG GTAAACAGGG 
    ACAACCTGTA CAAGTTCATG CTTCGGATGA AAGATACATC GGGAGCTTTC 
    AGAATGCATG ATGGTGGTGA AATAGATGTT CGTGCTAGCT ATACTGCAAT 
    ATCGGTTGCC AGCCTTGTGA ACATTCTTGA TGGTGAACTA GCAAAAGGTG 
    TTGGAAATTA CATAACAAGG TGTCAAACCT ATGAAGGTGG CATTGCTGGG 
    GAACCGTATG CTGAAGCTCA TGGTGGGTAC ACTTTTTGTG GGCTGGCTAC 
    GATGATCCTG CTTAACGAAG TGGACAAACT TGATTTGGCT AGCTTGATTG 
    GCTGGGTGGC ATTTCGCCAA GGAGTGGAAT GTGGATTTCA AGGACGAACT 
    AATAAATTGG TTGATGGTTG CTACTCCTTT TGGCAGGGAG CTGCTCTTGC 
    TTTAACACAA AAACTAATGA CAGTTGTTGA TGAGCAATTA AAATCATCAT 
    ATTCCAGCAA AAGGCCTCCA GGAGATGATG CTTGTGGTAC GAGCTCTTCT 
    ACTGAAGCAG CATATTATGC TAAGTTTGGA TTTGATTTTA TAGAGAAGAG 
    CAACCAAATA GGCCCACTGT TCCACAACAT CGCGCTGCAG CAATACATCC 
    TGCTTTGCGC ACAGGTGCTG GATGGAGGGT TGAGGGATAA GCCTGGGAAG 
    AACAGAGATC ACTACCACTC GTGCTACTGC CTGAGTGGTC TGTCAGTTAG 
    CCAGTACAGC GCCATGGTTG ATTCTGATGC GTGCCCCTTG CCGCAGCACG 
    TGCTTGGTCC TTACTCAAAC TTGCTAGAGC CGATCCATCC GCTCTACAAT 
    GTTGTACTAG ACAAATACCA TACGGCCTAT GAGTTCTTTT CAAGCTAGTG 
    ATACAACTGT CTAGGACATG TATGATATGT ATGAGCTCTA CAATGTTGCG 
    CCTTACAAGT TACAACTGTC TAAGACATGT ATGATATTTC ATTCTTTTTT 
    ACACTGACTG AACGGCCCCA GATACCAAAA GTCCATATAA ACTCGC

    Gene models with high sequence identity

    1. AT5G40280.1 [+] show detail - Prenyltransferase family protein
      E-value: 6e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAA 1.6e-156
    HMMPanther GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT 1.6e-156
    superfamily Terpenoid cylases/protein prenyltransferase alpha-alpha toroid 8.3e-113
    HMMPfam Prenyltransferase/squalene oxidase 1.9e-11
    HMMPfam Prenyltransferase/squalene oxidase 1.7e-08
    HMMPfam Prenyltransferase/squalene oxidase 2.2e-08
    HMMPfam Prenyltransferase/squalene oxidase 1.1e-07
    Gene3D no description 1.4e-130

    See the detailed result >

    AT5G40280.1

    Model type
    Protein coding
    Short Description
    Prenyltransferase family protein
    Curator Summary
    encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.
    Computational Description
    ENHANCED RESPONSE TO ABA 1 (ERA1); CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 2257 Blast hits to 1610 proteins in 263 species: Archae - 4; Bacteria - 30; Metazoa - 707; Fungi - 630; Plants - 303; Viruses - 4; Other Eukaryotes - 579 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR