K16141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16141

Determination of introduced cDNA(s)

  • J013091L19 - Rice Full-length cDNAs - Original: J013091L19

    full reading [+] show sequence

    Nucleotide sequence: J013091L19 - full reading 
    GTGGGACCGG TTTTCATCTG TTCTTGTCCT GAGAGGAGGC GAGCAGAAGG 
    CTCGTGCGAC CGCCACGAGA AGGGCGACGA CGGCGGCGGG ATCAAGGTCA 
    CTCTCGACTC GACGACGACG GCTTGCTCGA CGGCGGCGGC TGGCGGCTCA 
    TCCCCAAACC CTAGGTCCGT CCCAACACTC CAAGAAGCCG GCGCGCGGCG 
    GCAGCGGGAT CAGGGTCGCT CTCAACGGCG ACGGCGGCTG GCGGCTTGCT 
    CGATGATGGC GGCTGGTGGC TCATCCTCAA ACCCTATGTC GAGAGAAGCC 
    TCGTCCTCGG CGGCCGCCGC GGCGGCGGGG GTGGCTGTGA GGGATGTTGG 
    GGATGACAAG CCCTTGCCGT CGGCGGAGGT TGACATCACC TACTGGGCGG 
    CGCAGGAAGA GGCGGCTGCG CTGCTTGAGT CGATGGCCGC GAGGGCTCGT 
    GGGGAGGACG ACCTACCGGA GGAGCAGCTG CAAGCCAATA ACCAACTACA 
    GGAAGACGAG GTAATGCTTA GTACTAGTAC TAGTTACTAG TTCGCCCATT 
    GCACTAGAAT GTGTGTATAA GTTCCCAAAC AGTATCAGTA TGCAGAACCA 
    TCAATCATGC TTATGGTGAA CAAATTTCGA AGTTACTGTT TATTTGTGCG 
    AAGATTTATT CCGGATGTAC TGTGCGCAGT AGTACTCAAG TCTCCTAAGA 
    CAGATATTGC AGTGAAATTA CACCTATATA ACATTCTGGT TTCTCTCGGA 
    GGTCCTAAAA TCTGCCCAGC AGTTCTGATG AGCGCATCAC TTTCAATTAG 
    GATACCAAAA TATGGAGATA TATTTATCAG GAAAGATTAG GATCACTCAA 
    CTTATACGTA GCTATTGCCT GGCGTAATGG ATTAGCACAT TGGAATACTG 
    CCAGTTCAAA TAGCCTAAGT AGTGTTATGT TTAGGTAATA GCACTGCGAG 
    CTATTTTTGG TGATGATATG GTGATCTTGG AGAATAAGGA CAATCTTCGA 
    TTTATTCAGG TAACATAAGT TTCTTTTGAA TCTTCTGTTG TCCTCAACTT 
    CTATCTTTTG AGAAGATTGT TCATGAATTA TTCCACAGAT TTTTGTGCAT 
    TATACACTTC CTGATAGTAT CCGTGTGTTC TTGAATCTTC GTCGAAGTGG 
    AGCTATGGTT GGAACTGATG ATAGTGAAAA CCACAATGGC GGAGAACTCT 
    ATCATCTTGC AGGTTGCAGC ATTTGCCACC TGTTGTGCTA ACATGTTTGT 
    TGCCACGGTC ATATCCAAGT ATATGTGCTA CATATTTTAC CATTTCAGCT 
    AAATGGTTGG ATGAACCAAA GGTCTCATAC CTGTGTGCTG CGCTTGATGA 
    GGTTTGGACA GAGCTTCCAG GGCAAGAAGT CATATACAGA TGGGTGGATT 
    GGCTGAATAG CTCTTCGTGG TCTTCCATTG CTTTGAATGA TGAAATAGTG 
    TTAGATCCAG ATAAAACATT AAAAATTGGA GATGAACGAG CTATCGCGAG 
    AAGAATTTTA GTTGAGTCTA CTATTCCTCT TATGCAGAGT TACAGTGAGA 
    AGAGATCTCA TAAGATATTT TTGGAAAGCC TTCTCGTGTG TGGAATTTGT 
    CTAAGTGAGG ATGTTGAAAT TTCATCAAGC TCCCATGCCA TCATTCCTTT 
    TGTTTGAAGT GTATGGAGTC TCACTGCAAA ATCCATGTGA AAGAAGGGAA 
    TTTAATGCAG CTGGCATGTC CTGATACAAA TTGCCGCAAT CCACTTCCGC 
    CATCCGTATT GAAAAGCCTT CTACGAGATG ATGGATATGC ACAATGGGAA 
    TCATTTGCTC TACAGAAACT GTTAGATGCA ATGCCTGATC TAGTTTACTG 
    CCCCAGGTGT TCTGCTGCTT GCTTGGAAGT TGACAATGAT GCTCAATGCC 
    CGGGTTGTTT TTTTACCTTC TGCACTTTGT GCAAACGCCG CCGCCATGTG 
    GGGGATACAT GTATTACTCC TGAAGAAAAA ATACGCATTT TGAAGGAACG 
    ACAGAAATTG TATTCCATAC CAGAGGAACA ATTGTTGAAA GAAAAGAGGG 
    AAATAGACGA GTTGATAAAT ATCCAGGAAG CACTTCGTGA TTCTAAGCAA 
    TGCCCTCGTT GTAAGATGGC TATCTCAAAA ATTGAAGGTT GCAACAAGAT 
    GACATGTGGG AACTGTGGGA GATTCTTCTG CTATCGTTGT AACAAAGCAA 
    TTGGAGGATA TGATCATTTC TGGAATGGAA ACTGTGATAT GTTTGAGAGG 
    GAACAAGATG AAAACCCACA GCAGCAGGAT GATGAAAATT TTGGTGGCGA 
    CCCTGACGAA GATGCTGAAC TCTTAGAACC TGAATGGGTG CTGTTAACTT 
    ATCCCTGTCC AAACTGTGGC CGTCGGAATG AAAAGCTCGG TACCAACAAT 
    CATATACTTT GCATCGGATG CCGAGGCCAT TATTGTGCGT TGTGTCGGAA 
    AAGAGTTTTG AGGGGCGAGC AACACTTTGG ACCTAGAGGC TGCCAGCAAC 
    ACACTGAAGA TTGATAGAGA TCTCGTATGT TGATCGCTAT GCAGAATGTT 
    GTTTTGCCTA TTCCAATGGC ATACTCGTAC CTCTGTTTCT GACACCCGCT 
    TTGTACCCAA AATTAGAGTT TTCCTGTAGC TGTATCATTT AATTTGCATC 
    AGGAATTTCA TAACACTTAC CAGTTATAGG CAGTTACACT GTTTATGTTT 
    GTGGAAAAAC AGATACCATG CACCTGATTT GAACAAAACA GGTTTTGGCT 
    TGTAATTAGT GAACAGTTCA GGTGTGTGGA GAATGAAAAT TCAATTATCC 
    ATTTT

    Gene models with high sequence identity

    1. AT1G32340.1 [+] show detail - NDR1/HIN1-like 8
      E-value: 2e-119; Score: 139.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 0.00028
    superfamily RING/U-box 9.1e-13
    superfamily RING/U-box 1.4e-07
    superfamily RING/U-box 0.00017
    superfamily RING/U-box 0.011
    superfamily Ubiquitin-conjugating enzyme/RWD-like 5.7e-12
    HMMPanther RING FINGER PROTEIN 14 (ANDROGEN RECEPTOR-ASS 6.3e-82
    HMMPanther ARIADNE RING ZINC FINGER 6.3e-82
    HMMPanther RING FINGER PROTEIN 14 (ANDROGEN RECEPTOR-ASS 2.6e-08
    HMMPanther ARIADNE RING ZINC FINGER 2.6e-08
    HMMPfam Zinc finger, C6HC-type 1e-08
    HMMPfam Zinc finger, C6HC-type 1.7e-08
    HMMPfam RWD 1.9e-12
    ProfileScan RWD 9.949
    HMMSmart Zinc finger, C6HC-type 3.6e-12
    HMMSmart Zinc finger, C6HC-type 0.00024

    See the detailed result >

    AT1G32340.1

    Model type
    Protein coding
    Short Description
    NDR1/HIN1-like 8
    Curator Summary
    Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine.
    Computational Description
    NDR1/HIN1-like 8 (NHL8); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3653 Blast hits to 3199 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 1736; Fungi - 604; Plants - 670; Viruses - 7; Other Eukaryotes - 636 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR