K16209

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16209

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16209

Determination of introduced cDNA(s)

  • J033022I08 - Rice Full-length cDNAs - Original: J033022I08

    full reading [+] show sequence

    Nucleotide sequence: J033022I08 - full reading 
    GATTCCACCA AAACCCCCAA ATCCCTCGTC TCGTTTGCCG CCGGCGATGG 
    CGGCGGCGGC GCCGCCCACA GGCAAGAAGC GTAGATTCGA GCGGTCCAGC 
    AGCCAGGAGC CACCCGGGAG CGGCGGCCTC GACCTCATCA GCGGCCTCCC 
    CGACGCCATC CTCGGCGAAA TCATCTCGCT CCTCCCCACC AAGTATGGCG 
    CCCGCACGCA GCTCGTCTCC CGCCGGTGGC GCCCCCTGTG GCGCTCCGCG 
    CCCCTCAACC TCGATGTTTA CGATCTCTCC GGCCAGGAAC GGAAGCGCGT 
    CGCCCTTGCC TCCAAGATTC TCGCCGAACA CCCTGGCCCC GCCCGCCGCT 
    TCTCCCTCCA CTGCTTCCGC CTCCGCGGCA GGCACGCCAA GCTGGACGGA 
    TGGCTCCGCT CCCGCGCCCT CGCCGATCTC CGGGAGCTTA GTTTCAGCTA 
    CGAGGTGGAG CGCGAGGCGC AGGCGCAGGC GTACCCGCTG CCGCCGTCCG 
    CTCTGCGGTT CGCGCCCACC CTCGTCGTGC TTTACCTCAG CAGCTGCGGT 
    TTCCCCGACG AGATGCCGCC GACGCTGCAT TTCCCTCGCC TCAAGCAGCT 
    CACGCTGTGC AGCGTCGCTA TCTCCGAGGA CGCCATCCAT GGCGTGCTGT 
    CACGCTGCCC TGCATTGGAG AGCCTGCTGC TGCAGGGGAA TTTCGGCGTT 
    CGCCGCCTTC GCATCAACTC CGCATCTCTC AGGAGCTTCG GCTTCTATTC 
    GAAATCCTGG GGCTTCTCTT CTGCATCTTG GAATGGATTT GCTGGTGCCG 
    AGTTGCAGGA GGTGGTCATC GAGGATGCCC CTTGCCTTGA AAGATTACTG 
    CCACTTTGTC CCAATGATGG CGTGGCGGCC ATCCGGGTGA TCGCGGCGCC 
    TAAACTGGAG ATAATGGGAC CACTCTCTGA TGGCATATCT CAACTCCACC 
    TTGGAACAAC GATTTTTCAG GAAATGACTG CTGTCAGCCT TACAACCTCA 
    ATGCGAAGTG TGAAGGTTTT GGTTCTTGAT TCTGATGGCC CTAATCTGGA 
    TGCAGTTGTT GACTTCCTCA GTTGCTTCCC CTGCTTGGAG AGGCTGTATA 
    TTGCTTCTCA ACCGTTTAAG GTTATTAAAA ATACGCGGAG GTATGACCCG 
    CTAAATCCAA TAGAATGCAT TCAGTTCCAT CTCAAAAAAG TGGTGATAAG 
    AAATTATGGA GGAAGGAGGT CAGATGTCGA CTTTGCCAAG TTCTTTGTTC 
    TGAATGCAAA AGCGCTAAGA GAAATGGAGT TAGCTGGCCT TAACAATTGC 
    AATCAGAAAT GGTTGGCCAA TCAACACAGG CGGCTTCAAT TAGAAAAGAA 
    AGCATCTCAA AATGCTCAAT TTACATTTAA AACTACCCAT ACGAGTGATT 
    TCAGTATGAA CAAGCACACC CATGATTTGT CAATATCTGA TCCCTTTGAT 
    AGGTCTTTAT GACCATGCTG CTCTCGGATA TGATACACAT GCAGTCTTGT 
    ATTATGTTCA AATGTTATAT TTGTACCTTC TCTTGTTTGG ATTTTAGTGT 
    CGTACTATGT CAGCAAGTTA ATGAGTTATC TTTATTTAAA GCCGCAACCT 
    AGTAAGTTTT TACCACC

    Gene models with high sequence identity

    1. AT5G60610.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 2e-14; Score: 78.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam FBD 4.6e-12
    HMMPfam Leucine-rich repeat 2 0.095
    HMMPfam F-box domain, cyclin-like 0.00063
    HMMSmart FBD-like 0.0053
    superfamily RNI-like 9e-14
    superfamily F-box domain, Skp2-like 1.4e-08
    Gene3D no description 2.1e-07

    See the detailed result >

    AT5G60610.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT2G26860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR