K16313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16313

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16313

Determination of introduced cDNA(s)

  • J033108B03 - Rice Full-length cDNAs - Original: J033108B03

    full reading [+] show sequence

    Nucleotide sequence: J033108B03 - full reading 
    GGTTCCCTCC TCTCCTCCTT TCTCTCTCCC TCCTCCCGCG CGCGGGGTCT 
    CGCCTTAACG TTTGCCGCAT ATGGGGGCGA CGAGCAAAGC GTAGGCCGGA 
    GGGAGGGACA GGGAGAGAGA GAGAGAGAGG CTTTCTGGCT CGCTCTCTCT 
    GCACGATCTC TCGTCTTGTT GGATTATACA GCCATGACAT GGTGCAACAG 
    CTTCAACGAC GTGCGCGCCG TGGAGAACAA CCTGGCCACC GCCGCCGCCG 
    TGGCCGCGGC CAAGAAGCAG CAGCAGCAGC AGCAGGTCTC CCAGCACGTC 
    AACCTCATCA AGACCTGCCC CTCCTGCGGC CACCGCGCGC AGTATGAGCA 
    GGCAGCGGCG GCGGCGACGA TCCAGGACCT GCCGGGGCTG CCGGCCGGGG 
    TGAAGTTCGA CCCGACGGAC CAGGAGCTGC TGGAGCACCT GGAAGGGAAG 
    GCGAGGCCTG ACGCGCGGAA GCTCCACCCC CTCATCGACG AGTTCATCCC 
    CACCATCGAG GGCGAGAACG GCATCTGCTA CACCCATCCC GAGAGGCTTC 
    CAGGAGTCGG CAAGGACGGC CTGATCCGGC ACTTCTTCCA CCGCCCGTCG 
    AAGGCGTACA CGACGGGGAC GCGGAAGCGG CGGAAGGTGC ACACCGACGA 
    GCAGGGCGGC GAGACGCGGT GGCACAAGAC CGGCAAGACG CGGCCGGTGT 
    TCACCGGCGG CAAGCTGAAG GGGTACAAGA AGATCCTGGT GCTCTACACC 
    AACTACGGCA AGCAGCGCAA GCCGGAGAAG ACCAACTGGG TGATGCACCA 
    GTACCACCTG GGCTCCGACG AGGAGGAGAA GGACGGCGAG CTCGTCGTGT 
    CCAAGGTGTT CTACCAGACG CAGCCGAGGC AGTGCGGCGG CGGCTCGGCA 
    GCGACGGCCA AGGACCTCTC CGTCGACCTC GTCGCCGGTA ACAACATCAA 
    GGCTAGCAAT GCTGCTGCTG AACACCACCA TAACGACGGC GTCGGCGGCG 
    GCGGCCACGG TGGCAACAAC AGCAGCATGC TGAAGGAAGC TGCAGGCATT 
    GTAGATTTCT ACAACCCAGC GGCGGCGCTA ATCGGCTACA GCCAGGCGGC 
    TCCTAACAAC AGGGCGGCTG CTTCTGCTCA TTTGACGATG CCTAACTTTG 
    AGGTGCACAC AGGAGGTGCA GGCTTTGGCC CCTGATGGAT GGAAGAAAAC 
    AAAGCAAATT AAACATATTT GACTGATGAT ATATATAGGT TAGATGGAGA 
    GGGCAGGGCA GGTATATGAT GGCAAATGTG CATCATGCAT GCTAGCATGG 
    TGTAATTTGC ATCGAGTGAA AAAAAAGGAG TTTACTAAAC CGTCTACGTA 
    CGTATTACTG GACAATAAGG AGTGTGTCGA GTGAGTTGCT GCACAGATGT 
    TGAAGCGTAG GGGGGTCGAT ATTCTTACAG TGTTCATTAT TGTTACATGT 
    GTACACATAT ATAACTTGAC ATTCTCAATT TTTTTGTTTA ATGATATATA 
    TATATATATA TATATATATA TATATATATA TATATATATA TATGTTGTTC 
    TAT

    Gene models with high sequence identity

    1. AT4G28500.1 [+] show detail - NAC domain containing protein 73
      E-value: 2e-100; Score: 363.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan No apical meristem (NAM) protein 33.334
    HMMPfam No apical meristem (NAM) protein 3.2e-29
    superfamily No apical meristem (NAM) protein 8e-40

    See the detailed result >

    AT4G28500.1

    Model type
    Protein coding
    Short Description
    NAC domain containing protein 73
    Computational Description
    NAC domain containing protein 73 (NAC073); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 10 (TAIR:AT1G28470.1); Has 2322 Blast hits to 2317 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2321; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR