K16335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16335

Determination of introduced cDNA(s)

  • J013154A11 - Rice Full-length cDNAs - Original: J013154A11

    full reading [+] show sequence

    Nucleotide sequence: J013154A11 - full reading 
    GTGTGGCCTC TTCTTCCTCC TCCGCGGCCG GGGACGGGGA ACTACCCCCC 
    GCCGGCCGCC GCAAATCCTC CTGCTCGTCG TCGTGGTGAG CTATGTCCGG 
    GTCGGAGCAC CCCATGGTGG CCGCCGCCCG CGCCGCCCTC GCCCACCTCC 
    AACTTCCCTT GCCCCCCGCC CCCGCCGGAT CCAATATGGA TCATCATCTT 
    CTTCCTCATT TCCTCCACAG GTCTCCCCCC TCTCCATGCT TCCTCCTCCT 
    CCGCACCCAA CACAAGCCTA AACCGCCGCA GCCGCAGCTC CACCTCCTTC 
    TCTGCACTGC TTTCGATTCC CTGGCCCATA GCCTGCAGGA GGTCCTGGAC 
    AAGCACAAAC CAAAGCTACA TCTGGACACA TTATTCCTCC ATGGAAACCT 
    CCCTTTCGCA AAGGTTGGGG TACCGCCGCC TCCCCCGCCA CCCGCACCCC 
    TCCTCTCCCC ACCGTCTGTC TCCGCCCACC ACCAACACCA ACCTGCAACT 
    CCAACTGAAA CCGAAACCGA GGACACTGCT GCTAATGACT CTCCACCACC 
    ACGGACCCTG CCTGTTCGCC TGCTCAACAT CCCTGTTGAC CGCCTACGCT 
    CCACACTTTC CACACTTTCA CTCACCGAGT TGATTGACCT AGTTCCACAC 
    CTGGTTGCTA GGTCCTTGCC ATCCCCTGAT ACTCATCCAG ACAAGAAGAA 
    ACTCTTCTCT GTACACCACT TCTTCCGATA TGCAGAATTT GAAGGAAAGC 
    GATTCTTTGA GGAGTTAGAC AGAGATGGTG ATGGTCAAGT CACCCTGGAA 
    GACCTTGAGA TTGCAATGAG AAAGAGGCGA TTGCCAAGGA GGTATGCTCG 
    GGATTTTTTA CGGCGCACCA GAAGTAACTT GTTTTCAAAA TCAATTGGGT 
    GGAAACAATT TCTATCCTTG ATGGAGCAGA AGGAGCCAAC AATATTGCGG 
    GCATACACCA CCCTGTGTTT GAGCAAGTCT GGGACACTTC ACAAAAATCA 
    AATTCTCACA TCTTTAAAAG GTGCAGGCCT TCCGGCCAAT GAAGATAATG 
    CTGCTGCCAT GCTGCGGTAC CTAAATGCAG ATTCAGAAGA ATCAATCTCC 
    TACAGCCATT TTCGCAATTT CATGCTCCTG CTTCCTTCAG AGCGCCTTGA 
    AGATGACCCT CGGAACATTT GGTTTGAAGC TGCTACTTTG GTTGCTGTTC 
    CTCCACCGGT AGAAATATCA ACTGGAAGTG TTCTGAAGTC TGCTTTAGCT 
    GGAGGTCTTG CTAGTGCACT TTCTACCTCC GTGATGCATC CCATTGATTC 
    AATGAAGACA CGTGTCCAAG CATCTTCTCT TTCTTTTCCT GATCTCATAT 
    CAACACTTCC ACAAATTGGG CTCCGAGGAC TTTATCGGGG TTCTATCCCC 
    GCAATTCTTG GTCAGTTTTC AAGCCATGGT TTGAGAACAG GAATATTTGA 
    GGCAAGCAAG CTTGTGTTAA AAAGTGTTGC TCCAACACTT TCAGATATTC 
    AGGTGCAATC ACTCTCTTCC TTCTGCAGCA CCATCCTGGG AACAGCAGTC 
    CGTATACCTT GTGAGGTTCT TAAGCAGCGT TTGCAGGCTG GAATCTTCAA 
    TAATGTAGGG GAGGCCATTG TTGGTACCAT GCAAAAAGAT GGTCCAAAGG 
    GCTTCTTCCG TGGCACTGGG GCCACTCTTT GCCGAGAGGT TCCTTTCTAT 
    GTTGCTGGAA TGTGTCTTTA TGCAGAAGCT AAAAAGGCGG CACAGCATGT 
    GTTGAACAGA GACTTGGAAC CATGGGAAAC TATTGCAGTG GGAGCGTTGT 
    CTGGAGGGCT TGCAGCAGTT GTCACAACTC CCTTTGATGT GATGAAGACT 
    CGGATGATGA CTGCTCCACC AGGCACCCCA GTCTCCATGC AGTTGATAGT 
    TTTCTCCATC CTTCGAAATG AGGGACCTCT CGGACTGTTC AAGGGTGCGA 
    TCCCCCGCTT CTTCTGGATT GCTCCTCTCG GAGCAATGAA CTTTGCAGGC 
    TATGAGCTCG CCAAGAAAGC AATGATCCAA ACTGAGAGTG ACTCCGCAGA 
    CTCTGTACAT GAGAAGAGAA CCACAGTGGG TTCCAGAGGA TGACAGATCC 
    AAATTCACCT GGTTACTCTA TATGGTGTAA AGAAAGGACA AGCCATGCAA 
    CAGAAATGTT TTTGCCCTTG TTGCAAAGAA TTAGAACC

    Gene models with high sequence identity

    1. AT2G35800.1 [+] show detail - mitochondrial substrate carrier family protein
      E-value: 0; Score: 692.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mitochondrial substrate carrier 1.2e-60
    superfamily EF-hand 2e-17
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther MITOCHONDRIAL CARRIER PROTEIN 4e-117
    HMMPanther Mitochondrial substrate carrier 4e-117
    FPrintScan Mitochondrial carrier protein 6.6e-06
    FPrintScan Mitochondrial carrier protein 6.6e-06
    FPrintScan Mitochondrial carrier protein 6.6e-06
    ProfileScan EF-HAND 2 11.529
    ProfileScan EF-HAND 2 6.201
    ProfileScan Mitochondrial substrate/solute carrier 17.3
    ProfileScan Mitochondrial substrate/solute carrier 14.79
    ProfileScan Mitochondrial substrate/solute carrier 19.703
    HMMPfam Mitochondrial substrate/solute carrier 4.5e-14
    HMMPfam Mitochondrial substrate/solute carrier 5.2e-11
    HMMPfam Mitochondrial substrate/solute carrier 2.6e-20
    Gene3D EF-hand-like domain 7e-12

    See the detailed result >

    AT2G35800.1

    Model type
    Protein coding
    Short Description
    mitochondrial substrate carrier family protein
    Computational Description
    mitochondrial substrate carrier family protein; FUNCTIONS IN: binding, calcium ion binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Mitochondrial substrate carrier (InterPro:IPR001993), EF-hand-like domain (InterPro:IPR011992), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G26360.1); Has 17569 Blast hits to 12630 proteins in 423 species: Archae - 0; Bacteria - 12; Metazoa - 7266; Fungi - 5152; Plants - 3396; Viruses - 0; Other Eukaryotes - 1743 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR