K16919

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16919

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16919

Determination of introduced cDNA(s)

  • J013106K06 - Rice Full-length cDNAs - Original: J013106K06

    full reading [+] show sequence

    Nucleotide sequence: J013106K06 - full reading 
    GGCCGGATTT TGCAATCCCA TCGGCCGGCA GAGCGCGACG GCGGCAGCTC 
    GGCCACCGCC GCGGCATCGC CGCCATGCCG CACTCACTCT CCCTCCTGCT 
    CGCGCCCAGC CGCGCGCTCT CCCTCTCCTC CCCACCGCTC CGCCTCGCCC 
    CAACGCACCC ACCACTTCGC CTGCACCACG ACGGCGGCCA CCTCCTCGTG 
    GGCACGACGA GGCGGCAGGC TCCCTCGCCT CGCCGCCGCC GTCTCCATGC 
    CGCCAGGGCT TCCGCGCCGT CCGCCGCCGC GGCGTCCCCC GTAGGGCCTG 
    CGGGCGAGGG TGGCGAGGTG GGGGGCAGGG CGAGGAAGGC GGCGGGGTAC 
    CGGAACAGGT TCCTGGACCT GGCGCGGCTG GGGGCCGTGG CGGAGAGCGC 
    GGCGGAGGCG CTCTTCCGCA GCGAGATTCG CCGGCGGCTG GCCGTCACGG 
    CCGTGCTCAT CCTGCTCAGC CGCGTCGGCT ACTTCGTCCC GCTTCCCGGG 
    TTCGACCGAC GGCTCATCCC CGATTCCTAC CTCAGCTTTG CACCCCTTCC 
    TGCAGATGAC CTCGGTGATT TTTCATCCGA ATTGAAGCTG TCATTTTTCC 
    AGCTCGGAAT CAGTCATCAG ATTTCAGCAT CTATTGTCAT GCAGGTTCTC 
    TGTCATGTTC TTCCATCACT TGAAAAACTA CGAAAGGAAG GGTTAGATGG 
    ACATGAGAAG ATCAAAGGCT ATATTTGGTG GCTGTCGCTG GGTTTTGCAC 
    TTGTGGCGGC TTTTACAGTG TCATGCTACT CACTGCAATA TTCTATATAT 
    GCTGCAAGTT ACAGAGTTAA GCATGTAATG ATAACAAGCC TTTTCCTTGT 
    TCTTGGTGCA ATGACAATGA CATGGATCTG TGACACTATA TCGGAATCTG 
    GATTTGGACA TGGCTCTTCC TTGATTATCT GTGTGGGAAT ATTGACTGGT 
    TATACAGACA CACTCCACAA GATGTTAACT CAATTTTCAG GAAATTGGTA 
    CAGCTGTTGG CCCTACATCT TGGGGATAGC TGGGACTTTT ATTTTGGTTA 
    CCATGGGAGC AGTACTGGTG ACTGAAGGGT GTAGGAAGAT AAAGCTTCAG 
    TACTATGGAT TTAAATTGGC TTCTGGTGCA AGGAGTGAGA GCTCCCCAGT 
    TACAGAGGTA GAGCCATATA TCCCTTTTAA CATAAATCCA ACTGGGATGC 
    AGCCCTTGCT TACCACCTCA TACTTATTAG CTTTTCCAAG CATTATGGCC 
    AGCATTTTTG GTACGCAATT TTGGGAAAGT TTGAAGGAAA CGTTGAATCC 
    AAAGACTTCA GTTGGTGGTG GTCCATGAGT TTATTATTTG ACATATGCAT 
    TTCTTGTCTT CGTCTTCAAT ATTTTTGACA TTGCAAACTT GCCAAAAGAG 
    ATATCTGACT ACCTGAATAA AATGAGTGCT AGAGTACCGA AGATAAAGCC 
    TGGAAGAGCA ACAGTAGAGT ATCTTACAAA AATACAAACA TCTACACGTT 
    TCTGGGGGGG TATATTGCTG AGCTTGTTGG CGACTTCCTC TTTATTACTT 
    GACCGATATC TCAGGCAGAT AAATGAGGGA TTTTCTATAG GTTTCACGTC 
    GGTGTTGATT ATTGTGGGCT CAATCATCGA GCTGAGAAGG TCTTATCAAG 
    CATACAATGT GATGCCAGCA CTAAGCAAAG TTCTAAGGAG ATATGGTGCC 
    TGAGGTTATG TACGCCACAT ATTTGGTTAT GATGGTATCA TCCACAAGAA 
    GAAGAGGGCC ATTTCAAAAA AACTTCAGAG TTTACAGGCT TACAGCCGAC 
    TAGATGCTGT GACCTTGATT ATTGTCAACA ACTTGCAGTA CGGTGCAGTA 
    AGAAGAGTTC TATAACCCAG ACCAATATTG TGCTTGGGTT GGGATGAGAT 
    TAGTATAGTT TGATATCAAT CTTCTGTGGC ATAAACTGGA ACTGAAGAAC 
    CAAGGAGGAT ATTTTGTTAC TCATGGCACA GCAACTATGA AGAGCGTGAC 
    CTACGAGGAG CTGTGTAATT GTGTTGTCTT TGGCCACTTC TGGAATGGTT 
    GACGGCTTGA TGCAATGCGA ACGAAAATTT GGATCCAATC TCACCCAGCT 
    GTATAATTTT CTGAAGATCA GATTGCCAAA TTGCTGGCTA GCTGCATCAC 
    GCTTAGTAAA TGGTGCGGTC AGAAGTCAGA ACCTGAAGTC TGCAAAATTG 
    CTGGTTTTGG GTTGATTGTT GGAACGTTCT ACATCAGAGG CTGGCGGGTT 
    GACCATCTGG ACTTATCCGT GTAGCACAAT GAAGATCAGC TGTCGTGCGT 
    TTGCTGACCA GTAGTATCTC TCTGTAGGCT TATGTTTTTG TAAATATATG 
    GCTTATTAAC AGTAGAACTT CCACTCCTGT CCTGACTTCT CAAAGGCTGT 
    TCTGTTCACT TTTCCAAAAA GCAGCTTCAT ATTTACAAAA GATAAAGAAG 
    CC

    Gene models with high sequence identity

    1. AT2G31530.1 [+] show detail - SecY protein transport family protein
      E-value: 0; Score: 654.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam SecY protein 1.1e-61
    HMMPfam SecY protein 6.9e-24
    HMMPanther PROTEIN TRANSLOCASE SECY SUBUNIT 2.5e-69
    HMMPanther SecY protein 2.5e-69
    HMMPanther PROTEIN TRANSLOCASE SECY SUBUNIT 3.6e-33
    HMMPanther SecY protein 3.6e-33
    superfamily SecY protein 1.8e-52
    superfamily SecY protein 2.8e-17
    FPrintScan SecY protein 2.4e-28
    FPrintScan SecY protein 2.4e-28
    FPrintScan SecY protein 2.4e-28
    FPrintScan SecY protein 2.4e-28
    FPrintScan SecY protein 2.4e-28
    FPrintScan SecY protein 2.4e-28

    See the detailed result >

    AT2G31530.1

    Model type
    Protein coding
    Short Description
    SecY protein transport family protein
    Curator Summary
    Encodes a component of the thylakoid-localized Sec system involved in the translocation of cytoplasmic proteins into plastid. Loss-of-function mutations result in arrest at the globular stage and embryo lethality.
    Computational Description
    EMBRYO DEFECTIVE 2289 (EMB2289); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, embryo development ending in seed dormancy; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208); BEST Arabidopsis thaliana protein match is: SECY homolog 1 (TAIR:AT2G18710.1); Has 8827 Blast hits to 8825 proteins in 2687 species: Archae - 73; Bacteria - 5355; Metazoa - 4; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 3299 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR