K17312

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17312

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17312

Determination of introduced cDNA(s)

  • J023007D17 - Rice Full-length cDNAs - Original: J023007D17

    full reading [+] show sequence

    Nucleotide sequence: J023007D17 - full reading 
    GACTTCTCCG CCTTCTCGTC GGCGTCCGAT CCCAAAACCC TCGCCGGCGG 
    CATGGGCGAC ATCGTCCGGC AAATCCTGGG GTGGTTCCCC GGCCATCCCG 
    CCTCCGGAAA CGGCGCCACG CTTTCCGCCG CCGAGGGCTA CGGCAGCGAG 
    GACCGCGTCA GCGCGCTCCC CGACGACCTT CTCCGCAACA TCGTCGCCCG 
    CCTCCCCGTC AAGGACGCGG CTCGCACCGC GGCGCTCGCC TCCCGCTGGC 
    GGCGCGTCTG GAGCTCCACG CCGCTCGTCC TCCGCGACGC CGATCTCCTC 
    TTCTCCGCCG GCGAGGCCGC GGGCGTCGCG GCCGTCGGCC GCGCCCTCGC 
    CGGTCACCCG GGCCCCTTCC GCGTCGTCCA CATCGAGCAC TGCATGTTCG 
    CGTTCCACCG TCCCGAGCTC GCCGAGTGGG CGCGCCTCGT CGCCGCCAAG 
    GGCGTGGAGG ACCTCGTCTT CGTCAACATT CCCGTCCACT ACTTCGATGT 
    GCCCCTCCCC GCCGACATCC TCCGCTGCGC CGCTCTCCGC CGCCTCTTCA 
    TCGGCAACTG GAATTTCCCG GCCACCTCTG GCTTCCCCCG CGGCGCCGAC 
    GTCTTCCCCC ACCTCCTGGA GCTCTACATT TGGAACACCG TCATGAGCGC 
    CAGGGACCTC AACCATCTGC TCGCCTGCAG CCCAGTGCTG CAGAGCCTCG 
    CGCTCGCCCT CAACAGCCAT CCCAACCGCG TCCGCCTCTG CAGCCAGAGC 
    CTCCAATGCG TGCTTCTTTT CTTGTCTAAG GCGGAGGAGG TCGCCGTGGT 
    GGATGCCCCA CTGCTGCAGC GCCTCGTTCT GTGGAAAATA TCAACTTCTT 
    ATGATACAGA TGATGAGTTG CCAGTAAAGA TTAGGCTTGC TTGTGCACCG 
    GAGCTACAGG TCCTGGGCTA TCTGGAGCCA AGAGCTCACC AGCTGCAGAT 
    TGGCGAAACC ATCATCAAGG CTGACACAAA GGTGATTCCA AGCTCCATGG 
    TTCCGAGTAT CAAGGTATTG GCCTTGAGGG TGAATTTTTG TGTGCAAGAG 
    GAGATCGCTA TGCTGGTCAG CTTCCTCAGA TGCTTTCCCA ATGTTGAAAC 
    ACTGCACATC GAGTCTGATA TAGATGATGA GTTCACTGGC CAGCCCCATG 
    CCAAGTTCTG GCAGGAGGTC TGTCCTGTTG AATGTATCAA TTCACACGTC 
    AAGAAGATTG TCTTTCATGA TTTTCATGGG GACAAATGCG AGCTTGAATT 
    CATCGATTTC ATCGCCAGGA CAGCACAGGA GCTTCAGGCT TTACTGCTTA 
    TGTTGACCAG TAAAACGTAT GGTCCTGTTG TTGATGTGGA TGAAGTGAAC 
    AGCCAATTGG GCGTCCTGTC ATTTGCATCT GAAGAGTGCA TAACGTCGCT 
    GCTTGGGCCT AAAGTGCAGA TGGTTCACAT ATTCCACAGA TCATTGGATC 
    TTTCTGTGGA TGACCCTTTC CTCTGATGAA CTTGAATGCG CTAGCTGGAT 
    AAATATTCCT TGATCTTTGC CTTATTATGG AAACAGTTAC CCTTATGTTG 
    CAGTGTTGCC TAGTTAGGCA CTCTCTTGTT GTTAATGTGC TTCCTCTGAG 
    ATAGGGCTAG TAGTTTCAAT ATTACTAAGT GGCTGTAAGC GTTTAAATTT 
    GTAGTACTAT GGTTTACTGC AAGGACCACT GTCCC

    Gene models with high sequence identity

    1. AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 8e-11; Score: 65.90

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan F-box domain, cyclin-like 9.312
    superfamily F-box domain, Skp2-like 2e-09
    HMMPfam FBD 7.2e-07
    HMMPfam F-box domain, cyclin-like 0.00021

    See the detailed result >

    AT1G13570.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR