K17526

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17526

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17526

Determination of introduced cDNA(s)

  • J013081H24 - Rice Full-length cDNAs - Original: J013081H24

    full reading [+] show sequence

    Nucleotide sequence: J013081H24 - full reading 
    GATTTCAAGG TCTTAATAAC CAACCAATTT ATCATTGCAT TGCATTTCAG 
    ACTGGAACCG GCCATTTCTC TCCAATCGGC GGCTACCATG CCGGCCAAGA 
    CATGGCGCTT ATCCTGGATG TCGCCCGCTT CAAATACCCT CCTCACTGGG 
    TTCCACTCCC ACTGCTTTGG GAAGCCATGA ATACAACTGA TGACGCAACT 
    GGTCTACTCA GGGGGTTCAT GCTTATCTCA AGGCACACTG CAGCTCCTTC 
    ATTGCTCTAC ACAGTGAGTT GCAGAGATGA AAGCTGGAAA AGCATGGCGA 
    AGTATTGCAT GGAAGATGTA CCCGATCTTC TTAAGGATGA GAGTGTAGAC 
    AATGTTCCAG CACTTCTGTC CCGCTTAGTG AAATCCCTTC CTGCCAATGC 
    TGGAAATTTG ATCAAATGGG TTATTGAAGT TAGGAGACAA GAGGAAGGAG 
    GATCAGGATT AAGCAAAGAG GAGGAAGAAA GGCTTATTTT GAAGGAAATG 
    ATACTACAGC AAGTCCGTGA TACTGAGCTT TTTAGATTAG TCCGTGAACT 
    GCAATTCACT AAGCAGCCAT GTTGTAGTTG CTCATATTCA AGTGATGATG 
    ATTCCTTTAC CCGGATTGCA GCCTCTGTGT GCTGTCAAGG GGCCGCATTG 
    CTAACAGGGA ATCTTTCATC AAAAGATGGG TTCTGCTGCA GAGAAACTTG 
    CTTCAAATGT GTACAAGTGG ATGGTGATGG GCCTAAGACT GTCGTTACAG 
    GCACAGCGGT TTCAGGAGTC AATGAACAAA GTGTTGATAT GCTTCTACCG 
    ATATCCACAT TGGAAACAAG CGTGTGCAAT TCAAATTCAA GCAACGAGGT 
    TGTCAAATAT CCATCTAGAA CAGATATTTT AACTGTTCTA TTGCTGGCTT 
    TACATCCTAG CACATGGGTG GGCATTAAAG ACGAGAGGCT GAAAGCTGAA 
    TTCCAGAGTC TTATTTCAAC AGACATTCTT CATGATGATC TTAAACGAGA 
    GATATTGCAT CTAAGACGGC AACTCCATTA TGTGAGGTCC TGTAAAGAGG 
    AGGAATATGG AGATCCTGTG CCACAATCCC ATTAACAATG ATGCAAATCG 
    CGCAGTTGGT TACCCTGGAG ATGCAAAAAA AAGGGGTTAG AGGAGGAACT 
    ACATACTCCG TATTACCTTT GTTTCGAGTG AGGACTTCTC ATTTTTGAGA 
    CACCTGACCT GAGACGGATC CGTGTAGACA TGTTCATGTT CATCACCTGT 
    GGTCGTTTCT CTTGTTAGTG ACAACTGACA ACTAGCGGGG AGGCACACGC 
    TAATTGTGCG GCTGGTGTCC TTGCAAAAGT TTCTC

    Gene models with high sequence identity

    1. AT5G44070.1 [+] show detail - phytochelatin synthase 1 (PCS1)
      E-value: 7e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Phytochelatin synthase 17.806
    HMMPfam Phytochelatin synthase, C-terminal 4.6e-119
    HMMPfam Phytochelatin synthase 9.2e-30

    See the detailed result >

    AT5G44070.1

    Model type
    Protein coding
    Short Description
    phytochelatin synthase 1 (PCS1)
    Curator Summary
    Phytochelatin synthase gene confers tolerance to cadmium ions. Catalyzes phytochelatin (PC) synthesis from glutathione (GSH) in the presence of Cd2+, Zn2+, Cu2+ and Fe3+, but not by Co2+ or Ni2+.
    Computational Description
    CADMIUM SENSITIVE 1 (CAD1); FUNCTIONS IN: cadmium ion binding, copper ion binding, glutathione gamma-glutamylcysteinyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochelatin synthase, C-terminal (InterPro:IPR015407), Phytochelatin synthase (InterPro:IPR007719); BEST Arabidopsis thaliana protein match is: phytochelatin synthase 2 (TAIR:AT1G03980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR