K17718

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17718

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17718

Determination of introduced cDNA(s)

J033023N20 - Rice Full-length cDNAs - Original: J033023N20

full reading [+] show sequence

GAGCTCGGCA TCAACACGCG CCAGATCTGG CGGAAGACGC TCTCCATCCT 
CCACCCGCTC CGCTCCGCCG ATCCCTCCCT CCACGCCGAC GCCGACCTCT 
CGGGCCCGTT CCTCTTCCTC CTCTCCTTCG GCCTCTTCCA GCTGCTCGCC 
GGCAAGTTCC ACTTCGGGAT CGTCCTCGGG TGGGTCACCG TCGCTTCCCT 
CTTCCTCTAC TTCGTCTTCT CCATGCTCTC GGGCGGACGC CGCGGCGATC 
TCGACCTCTA CAGATGCGTC AGTCTCGTCG GATACTGCAT GCTCCCCATG 
GTCATCTTCT CCGCGATCTC CCTCTTCCTG CCTCGGGGTG GCGGCCTCAT 
ATTTGGGGTG GGCATGGGGT TCGTGCTGTG GTCCACCAGG GTGTGCACCA 
GGTTGCTCGC TGAGCTTGCA TCAAGCGGTG ACGAGCATAG GGGGCTCATC 
GCCTACGCGT GCTGGCTTGT CTACATGCTC TTCTCGCTGC TCGTCGTCTT 
CTGATGCCCT TTTTATGATC ATGTTCAGGA TTCTTTTGCC GTATGAAGTG 
GAGAGCTGCC AATCTACCAG TCGCTGGAGT GGTCTTGGTG TGTTTTGCTG 
GACAACAGAT TATCACGCCA GTTGGGAGAT TTTGTGTAAT GATCTGTTCC 
TTTTTCACCC CGTAGTTCCT GTGGCATGGT AGTTTTAGAG GGATCGTACA 
GATCTTGGTA AAGAAAAGAA AGGCAAGATC AAGACACCGA AAATATGAAG 
TAATTAGGTT TTGCTGAATA TTGATGGAAT CTGGCGACTT TCAAACTAAT 
TCGTGGTCTG TACGAACTTG TTCATTGTAT TTACTTACCA CGATTAGTTG 
TTTTAGGGTC ATTTCTGCCT ACTTTGTTTT TACCCCCATC TTTTCTTCGT 
TTCAGTTTGA TAAGAGAGGA TTGTTTTATC

Gene models with high sequence identity

AT2G36300.1 [+] show detail - Integral membrane Yip1 family protein
E-value: 5e-41; Score: 165.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Yip1 domain	8.2e-13
HMMPanther	GOLGI MEMBRANE PROTEIN SB140 (YIP1B)	6.6e-65
HMMPanther	GOLGI MEMBRANE PROTEIN YIP1	6.6e-65
Coil	coiled-coil	0

See the detailed result >

AT2G36300.1

Model type: Protein coding
Short Description: Integral membrane Yip1 family protein
Computational Description: Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT3G52760.1); Has 658 Blast hits to 658 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 123; Plants - 111; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Link: InterPro Scan - TAIR