K18142

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18142

Determination of introduced cDNA(s)

J033069N12 - Rice Full-length cDNAs - Original: J033069N12

full reading [+] show sequence

GCTTTTCCTC CTCCTCGCGA CGACGCCTCC CTCGTACGCC GGCGCTCTCG 
CAGTTGCCGC CGCCGCCGCC GCGAACGCCC ACCGCCCGCG CTCTGGTCGG 
TGGATCGTGA CGTGCTGTGG TGGTCTCTGA TCTGCTCTGG GGGTGGGTGG 
GCGTCTCGCG GAGTCGCCGT GTTCGTCGAG GGCTCGATCG GCTCGGGGAG 
AGCGAGTGAG AAGAGGTGAG GGTTGGGGGG AGGCACATCC GCGGCGGCGG 
AGAGATGGCG GATTTCCGGA CCTCCACGCA TCGGGAGAGG TGGATCTTCC 
AGACGAACGA TCTGATGGAT AGATGGGGGG CGGCGAACCA GCGGGCCACG 
GAGACGCTCG TTCAGTATGG AACGACGCGG TTGAAGGTGG ACCCTGTTGA 
TGGGTCGCTG TCGTACCCGG AACCTGCGCC TGATCATGTT GTAGGGAGCT 
CAGGTGTAAA GCCTCTGTCT TGTGAAGAGG AGCGATTGAT GCGGGTATTT 
TATGAGCAAA AGATTCAAGA AGTATGTTCA GCATTTAAGT TCCCTCACAA 
AATCCAGGCT ACCGCAATAA TATATTTCAA GAGATTTTAT CTGCAATGGT 
CTGTAATGGA ACATCACCCA AAGCATATTA TGTTAACTTG TATTTATTCT 
TCTTGCAAAG TGGAAGAAAA TCATGTTTCT GCTGAGGAAC TTGGTAAAGG 
AATTCAACAG GACCACCAGA TTATTCTAAA TAACGAGATG ATTGTTCTCA 
AATCTTTAGA TTTTGATCTG ATTGTTTATG CTCCGTATCG ATCTATCGAA 
GGATTTGTTG ATGACATGGA GGATTTCTGC AGAGCAGGTA ATGGTGAGCA 
CCAACGGTTG CAGGATTTAC GTCAAACTGC GATATCTCAG GTTGACAAAA 
TGATGTTGAC TGACGCTCCT CTTCTCTACA CTCCTGGACA GTTGGCTCTG 
GCTGCTTTGC ACAAATCCAA TGATATGCAC AAGATCCTTA ATTTTGAAAG 
GTACTTGGAA AGTGTTTTTT CAAGGCAACA TTCTGATTGT CCAATCGAAC 
AATTTGTTGG GTCAATCAAT ATGATCAATT ATTTGGTTGA GCAGCTTAAA 
ATACCTACTC CTAAGGACAT GAGGCATATT GACCGCAAGC TTAAGCATTG 
TTTGGATCCA AGCTCACAGG ATGAGCATAA GAAGAAAGAG AAGAAGTCGA 
AGCACAAATC AAAAAGGGCA GCTAATGAAG CCCAACTTGA CAGCTAGAAA 
ACATACGGTT GGGCTGCACC GTGTAAGAAT CAGTTCTTTA GTTTGTTGTG 
GCTCCAGTTG ATCAAAAGAG CTACTTTCCT GAGCAGGTGA GGTTCCGTTT 
TAGCCGAGGA CAACCAATTT TGAGATGAAG CGAGATAATA CCCATGACCT 
CGCCTTCTTG TAATCTTGTG TGCCTGGAAG CCCTAGCAAA CTCCTCGTTG 
CAATGGCTAC TGTACTTTTT TTGGGGGGTA ATTTATCCCT TGTCAAATGG 
GAAGAAGCAG CATACATCGG ATGATTGCCT CCATATACGA AAATGACAGC 
TAACTCAGAC TTTTTTCGGT TGCATTTTTC TGTTTACAAT TCTCACTATT 
ATTAACGTAT CTGATTGACT TGCTACAAAG GGCCTAGGTT CCAAATTGAC 
AATTTTGCAA GTTTTCAGCC ATAGCAGAGG GTTTACAGCT CCAAGCTATA 
AAGGTTGAAG AAAAGGTAAA TTAATTCAAC AGAGAACATC AGCTGACGAG 
CACGATTGTA CAGCTCATCC TATGTCTGCA ATTTTTGCTC TCATCGGTTA 
CTAAACCGAG TATGAGAGCA TTTGTCATTT GTTTTGTTCC ATGTGTTTAC 
AGTTGACACA AATAGAAGTC GTCCTTGCTC AGACAAGGTT GTACGTAAGT 
GCAATATAAT ATAAAGTACT CCATCCGTCT C

Gene models with high sequence identity

AT5G27620.1 [+] show detail - cyclin H;1
E-value: 5e-99; Score: 358.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Cyclin-related	2.3e-53
superfamily	Cyclin-like	4.6e-32
superfamily	Cyclin-like	5.6e-32
HMMPanther	Cyclin H	2e-111
HMMPanther	Transcription regulator cyclin	2e-111
HMMPfam	Cyclin, N-terminal	1.1e-11
HMMSmart	Cyclin	2.3e-15

See the detailed result >

AT5G27620.1

Model type: Protein coding
Short Description: cyclin H;1
Curator Summary: core cell cycle genes
Computational Description: cyclin H;1 (CYCH;1); CONTAINS InterPro DOMAIN/s: Cyclin H (InterPro:IPR015432), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G48640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR