K18207

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18207

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18207

Determination of introduced cDNA(s)

  • J013109D16 - Rice Full-length cDNAs - Original: J013109D16

    full reading [+] show sequence

    Nucleotide sequence: J013109D16 - full reading 
    GAGTCCGCCA CCCACCGCCG CCCACCGCCG AGCGGCCTCC CCGCGCGGCG 
    AGGCCAAACC CTCCCATGTC CACCCCGGCC GGCGTGGCGC CCCGCCGCTC 
    CTCCAGGCTC GCCTCCAGCG CTCCTCCGCT CGGAGCCGGC CAGCCTTCCT 
    CCTCCCCACT TCCTCGGCGC CGCCGCCGCC GCGCTTCGCC GTCTGGCTGC 
    GCCAGAGAGG TTGACAACTC GCCTCCTCCG GTGGTCATCT TAGATGACAA 
    CGAAATGGAG CAGCATGTTG AGGCAGAAGA AATGAAGAAG CAAGGGGAAG 
    AGAGTGTGGA GGCAAATGAA GCAGAGGAGA AGGACAAGGA TGCGGAGGTC 
    TTAGAGGAAC TACCTGATTG GCTTCCTGAT GGTTGGATCA TGGAGGTACG 
    TTGTGGCGAC AACGGCAACA TCTACCGGTA TTACACTTCC CCGGTGTCAG 
    GATACACATT CTCTACAAAG ATGGAGACAC TACATTATCT TTTTTCGGAG 
    ATGGATGAGC GTGTGCTGGA GTCTCAGGCG TGCGCCGATG ACAATGAGCT 
    TCATAGAATG CACACATGGC TTCCAGATGG GTGGGCAATT GAAGTCAGAG 
    CTGGGGGTAA GAAGATGGAA AAAATGTACA AGTTCTATGT TCATCTGCCT 
    ACTGGAATGC GGTTCTTGTC GAAAGAAAAT GTACTGCTCT ATTCTAATGA 
    GGGGAAGATT TCCAGATGTG ATGTAAAGGG TTTGTGTGAT ACAAGCTCTG 
    AAGATAATAT TCTTGCAATG GTAGAATTTA ATCCAGATGG GCTTCCAGAA 
    GGATGGGTGA AGGAAATAAT ATTTAGAAAG TGCAATGATG GAATTAGGAA 
    AGACCCGTAT TATACTGATC CTGTTAGTCG TCATGTATTC CGCACACTCA 
    AGTCTGTAAT CAACTACCTT GAAACTGGAC AAATCACTAA ACATGCCTAT 
    ATTCCGAGGA GAAGCGTTAC TGATATGTAC TCTTTTGACA GGTGCACAGA 
    TCTGCCTCAA AGTATGCTGA AAAGACTGAA AATACAAGGA AAAGCAAAGA 
    AAAAGTCTGT AGGAGCATCG GTCAAAGGCA AGAAACTATC TAATGGCCTG 
    GCATCAAATA ACTGTATGTC TTCTGGGTTG GATCCTGAAA TCGGGCCAGA 
    AGAAAGGAAA CTTGGAACTG TTAAATCCAT AACCAAAGAA GCAGTTAACT 
    CAGATACTAT CAAGCGATCA AGAGGAAGGC CACCGAAAAT CTTGATGCCA 
    ACTATTGAAA GCACCAAACC TGAGATTGCA TTAGTCACGT CAGAGGCTAT 
    CAAGAGATCA AGAGCTGAAG GTGTCAATTC TTGCTTAATT CATCTCTCTG 
    AACCAAATGA AAAGATGGTC AAAGCCACCA GTGCAGTAGA ACCTGCCAGT 
    TCAAATAATG CCAAACGACA TGGAGGGAGC CCGCAAAAAA AAATTTAAGC 
    ACATTACTGA CATCACTTTA GATTGTGCCA AGAGTTCAAA TAAGGAGTCA 
    GAGCATATTG TTACAGCAAA GAAATTGGGT ATTGGAGGTG GAGAACAAGT 
    GGCAAACGAA AATACATTGG AGCACACTAA CTTGAAAGAG CACCTTGGGG 
    TAATCCAGGA CTACACAAGC AACAGGAAGA AAGATAAATT GAACTTGATT 
    ACTGATCCAG ATCTGCATGA GCATAAAAAC GGCAAGTTTA CTGAAAAACT 
    AGCGTGCACT GCAGTTCATA AATTTTATAT GAGGAGAAGT AGCAATCATA 
    CAGTGGCATT GAAAAAAGGA TAATGAAAAC AAGATACTCT TACCGAGTTT 
    AGAGCCCTTC TCCAAACATA ATTGGAGCAG AATAAAGAAC ACTTCAATTC 
    CCTCG

    Gene models with high sequence identity

    1. AT5G52230.2 [+] show detail - methyl-CPG-binding domain protein 13
      E-value: 1e-06; Score: 52.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DNA-binding, integrase-type 2.5e-22
    superfamily DNA-binding, integrase-type 7.5e-11
    superfamily DNA-binding, integrase-type 7.4e-09
    HMMPfam Methyl-CpG DNA binding 3.2e-05
    HMMPfam Methyl-CpG DNA binding 0.00012
    ProfileScan Methyl-CpG DNA binding 12.104
    ProfileScan Methyl-CpG DNA binding 13.805

    See the detailed result >

    AT5G52230.2

    Model type
    Protein coding
    Short Description
    methyl-CPG-binding domain protein 13
    Curator Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
    Computational Description
    methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
    Link
    InterPro Scan - TAIR