K18508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18508

Determination of introduced cDNA(s)

  • J033042C03 - Rice Full-length cDNAs - Original: J033042C03

    full reading [+] show sequence

    Nucleotide sequence: J033042C03 - full reading 
    GACAGACTTA TATTCAGAGT TTCAGACACC AAGAGCATCT TGTACCACCT 
    ACGCAGAGTT TTGTTTGCTT GCTTGTTTGC TTGTCAGTGT CCAGAATGGC 
    AGCGAGGGTG GCGTGGATCG GCGCGGCGGC GGCGGTGGTG GTGGTGGCGC 
    TGATGGCCGG TGGCGCGGCG GCGCAGCCGC CGTCGTCGAC AAGCGGGTGC 
    ACGCAGACGC TGCTGAGCAT GTCGCCGTGC CTCAACTACC TGACCGGGAA 
    CGAGACGGCG CCGTCGGCGT CGTGCTGCGG CAAGCTGGGC GAGGTGGTGA 
    AGTCGCAGCC GGAGTGCCTG TGCGTCGCGC TCAACGCCGA CACGGCGGCG 
    CTCGGCCTCA GCATCAACCG CACCCGCGCG CTCGGCCTCC CCGACGCCTG 
    CAAGGTCCAG ACGCCGCCGG TCAGCAACTG CAAGAGTGGC GCTGCTGCTC 
    CTCCTGCGGG ACAGACGCCG ACGACTCCGG CGGGGACAGG GTCGAAGGCG 
    ACGCCGGCGA CGCCCGTGGG CTCCGGCGTC GCGCCGCTCC GTGTCTCGCC 
    GGTGGGGATC CTCGCCGGCA TCGTCGTCGC CGCCGTCTAC GCCGTCTCCG 
    CCGTGTGAGC TCGACGTCGA CGACGAACCC GGCAAGCCTA TCACCGTCTG 
    TATCAATCTT GATCGGTGCA CGCATTTGAG GATTTCGATG TGATGTGAGC 
    ATGGCACGCG TGCGTGTAGG AATTCGTTAC GGATTTGAGC TGTTCTTCCT 
    CCATTGGTTT ATGCTACTGC TGCTCCCATT TGTGCCACGA TCAGAGGAGC 
    TTGTTTGATT ATCTTTTTAT TATTATTATT ATCTAGGATT GATTCATCAC 
    TTCCATTAAT TCTGAATAAA AACTTGTATT TCTCCCC

    Gene models with high sequence identity

    1. AT3G22600.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 3e-26; Score: 115.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant lipid transfer protein/Par allergen 7.1e-06
    FPrintScan Plant lipid transfer protein/Par allergen 7.1e-06
    FPrintScan Plant lipid transfer protein/Par allergen 7.1e-06
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 1.5e-22
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 8.6e-07
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 5.8e-09
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 2e-05

    See the detailed result >

    AT3G22600.1

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G14815.1); Has 1019 Blast hits to 1015 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 1010; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR