K18710

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18710

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18710

Determination of introduced cDNA(s)

  • J023133N21 - Rice Full-length cDNAs - Original: J023133N21

    full reading [+] show sequence

    Nucleotide sequence: J023133N21 - full reading 
    GATTTCCTTC GCACTCAAAA TCTCATCTCC TCTCCTCCGC TTCCCACTCG 
    CCTTCGCGTA GTGATACTAG TAGTAGCCAA GTTTCTTCGA GCGTTGGATC 
    GCGTGGGGGG CTAGGGTTTC GCGGCCATGG AGCAGAGGAA CCTGTTCGTG 
    TCGGCGCTCA GCGTCGGGGT CGGCGTGGGG CTCGGGCTCG CGTCGGCGAG 
    GTGGGCAGCT CCGGGGAGCG GCGAGGGCGG CGGCGGCGCG GGGATCGGCG 
    TGGCCGAGCT GGAGGCGGAG CTGAGGCGGC TGGTGGTGGA CGGCCGCGAG 
    GGCGACGTCA CCTTCGACGA ATTCCGCTAC TACCTCAGCG AGCGGACCAA 
    GGAGGTGCTC ATCAGCGCGG CGTTCGTTCA CCTGAAGCAA GCGGATTTGT 
    CCAAGCACAT CCGCAACCTC TGCGCCGCAA GCCGCGCGAT ACTGCTCTCT 
    GGCCCAACAG AGCCCTACCT GCAGTCCCTA GCGAGAGCTC TGTCGCACTA 
    TTACAAGGCA CAGTTGCTAA TCCTGGATGT CACCGACTTC TCTCTCCGGA 
    TCCAAAGCAA ATATGGGAGC TCCAGCAAAG GCTTGGCTCA AAGCCAGTCC 
    ATTTCTGAGA CCACATTTGG GAGGATGTCT GATTTGATTG GATCTTTCAC 
    AATATTTCCA AAGAGTGCTG AACCTAGAGA ATCATTGCAA CGTCAGACAA 
    GCAGTGCAGA TGTGAGGTCC AGAGGATCTG AAGCTTCCAG CAATGCACCT 
    CCACTTCGGA AAAATGCTTC AATGTCTTCT GATATTAGCG ACGTTTCCTC 
    ACAGTGTTCT GCACATTCAG TTTCAGCTAG GCGAACCAGT AGCTGGTGTT 
    TCGATGAGAA AGTTCTGATA CAGTCACTTT ACAAGGTCAT GGTTTCTGTG 
    GCTGAAAATA ATCCGGTTAT TCTTTACATA AGGGATGTTG ACCAGCTCCT 
    TCATAGATCG CAGAGGACTT ATTCTTTGTT CCAGAAAATG TTAGCCAAGT 
    TAACTGGACA AGTGTTGATA CTTGGCTCCA GATTACTTGA TTCAGATAGT 
    GATCACACGG ATGTTGATGA GAGAGTTAGT AGCCTATTCC CTTTTCATGT 
    TGATATTAAA CCACCGGAAG AGGAGACCCA TCTCGACAGT TGGAAAACTC 
    AAATGGAAGA AGACACAAAG AAAATCCAGA TTCAAGACAA TAGAAACCAC 
    ATCATAGAGG TACTGTCAGC GAATGATCTA GACTGTGATG ATTTGAGCTC 
    AATCTGCCAA GCTGATACTA TGGTTCTCAG CAATTACATA GAGGAAATTA 
    TTGTCTCGGC AGTCTCGTAT CATATGATTC ACAACAAGGA TCCTGAATAC 
    AAAAATGGGA AGCTTGTTCT ATCATCTAAA AGTTTGTCCC ATGGGCTAAG 
    CATTTTCCAA GAAAGTGGCT TTGGTGGGAA AGAGACTCTG AAATTAGAGG 
    ATGATCTGAA AGGTGCCACT GGACCCAAAA AGAGCGAGAC AGAGAAATCA 
    GCCACAGTGC CACTTAAAGA TGGTGATGGT CCATTACCAC CACCAAAACC 
    GGAAATTCCA GATAACGAGT TTGAGAAGCG CATCAGGCCA GAGGTTATAC 
    CAGCCAGTGA GATAGGAGTG ACTTTTGATG ACATTGGAGC CCTGGCTGAC 
    ATCAAAGAGT CGCTTCAGGA GCTGGTCATG CTACCTCTTC GACGGCCCGA 
    TCTTTTTAAA GGAGGACTTC TTAAGCCTTG CCGGGGAATA TTGTTGTTCG 
    GGCCACCGGG AACAGGGAAG ACAATGCTTG CAAAGGCTAT AGCCAATGAC 
    GCTGGTGCCA GCTTCATCAA TGTCTCGATG TCCACCATCA CATCGAAGTG 
    GTTCGGGGAG GACGAGAAAA ACGTCCGAGC ATTGTTCAGT TTGGCTGCTA 
    AGGTTGCTCC TACAATCATT TTTGTGGATG AGGTGGACAG TATGTTAGGA 
    CAGCGCGCTC GATGCGGTGA ACATGAGGCG ATGCGGAAGA TCAAGAATGA 
    GTTCATGAGT CACTGGGATG GTCTCATGTC AAAATCGGGT GAAAGAATCC 
    TTGTTCTTGC TGCTACAAAT AGACCCTTTG ATCTTGATGA AGCCATCATT 
    AGGAGATTTG AGCGCAGAAT CATGGTTGGC CTTCCAACTC TAGATAGCAG 
    AGAGCTGATC TTAAGGACAC TATTGTCAAA AGAGAAGGTT GCTGAAGATA 
    TTGATTACAA GGAGCTTGCA ACAATGACCG AAGGATACAG TGGAAGCGAC 
    CTTAAGAATC TTTGTGTGAC AGCTGCTTAC CGCCCTGTTA GGGAGCTCCT 
    CAAGAGAGAA CGAGAAAAGG AGATGGAAAG AAGGGCAAAC GAGGCAAAAG 
    AGAAGGCGGC TACGGCAGAG AATTCAGAAA GTCCTGAAAG TAAAAAGGAG 
    AAGGAGAATT CAGAAAATCC AGAAAGTAAG GAGAAGGAGA AGGAGAGGAA 
    GGAGAATTCA GAAAACAAAG AAGAGAAAAC AGAAAACAAG CAGGATAACT 
    CAAAGGCTGA AGGTGGAACT GAAGGGACAA TTGACCTCAG GCCACTGACG 
    ATGGAAGACT TGAGGCAGGC AAAGAATCAA GTTGCTGCGA GCTTCGCCAC 
    CGAGGGTGCT GTAATGAATG AGCTGAAGCA ATGGAACGAC CTATACGGAG 
    AAGGTGGCTC CAGGAAGAAG CAGCAGCTGA CGTACTTCTT GTAGAAATCA 
    TGCAAGCTTG GTCCCAGGAA GGCCAGGATT GCCTGCGGCT GTGGAGAAGA 
    GGAATTCAGT GGAGTAGAGC ACGAGTTTGG TAGTGGGAAA GGATTCTCTT 
    CGTTTGTTAG TCTGTACTTG GATTGATTAA GCGGTTTATA TTGTAATCAT 
    TCATCTATAA GTAATTTTAG CTTGGCTGTT GCGATGTAAA GCTTCAGTTA 
    GTTTAGCCAT AGAAAGCTGT GATGTAAATT CTTACATATG TTCGATGCGT 
    AGTATAGTAA ATTTTTATAG TCAATCACTG GGAAATACC

    Gene models with high sequence identity

    1. AT1G64110.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 855.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan ATPase, AAA-type, conserved site 0
    superfamily P-loop containing nucleoside triphosphate hyd 6.5e-62
    superfamily P-loop containing nucleoside triphosphate hyd 4.9e-06
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther AAA-FAMILY ATPASE 1.7e-166
    HMMPanther AAA ATPASE 1.7e-166
    Gene3D no description 3.1e-51
    Gene3D no description 3.4e-15
    HMMSmart ATPase, AAA+ type, core 7.6e-20
    HMMPfam ATPase, AAA-type, core 5.1e-38

    See the detailed result >

    AT1G64110.2

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 45379 Blast hits to 42847 proteins in 3276 species: Archae - 1573; Bacteria - 21664; Metazoa - 5045; Fungi - 3902; Plants - 3254; Viruses - 30; Other Eukaryotes - 9911 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR