K19006

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19006

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19006

Determination of introduced cDNA(s)

  • J013125P17 - Rice Full-length cDNAs - Original: J013125P17

    full reading [+] show sequence

    Nucleotide sequence: J013125P17 - full reading 
    GATCTCTCCT CCTCCCTCAT CCTCCTCTCC TCTCTGTGTT TCTCTCGTTC 
    CTCGCTTCCT TCGCTTCGCC CCCCTTCTGG CATCCTTCCT CGCGCGGCCT 
    CTCCCTCCCA TGGTCCTCAT GGCCGCCGTC GACGACCACG ACCGCCACCG 
    AGCCGGCAAT TCCTCGTCTC CTTCGGAGGA TTCCCCGGCT CCGGCTCCGG 
    CTCCGGCTCC CGCTCCCGCT CCGCCGCAGC CGTCGCGCAC GCGGCTCCAC 
    AGCTTCTCGT TCCCCACCCT CAGCTGGGGC ACCCACCGCC TCCTCCGCTG 
    CTCCAAGAAC CCCGCCTCGT CGCCCCCTCC CGCGGCGCCG GACACCCCGT 
    CGCCGGACAA GGAGAAGGCG GCCCACCGCT CCACCGACGG CGTGGGCGGC 
    GGCTGTTCGC CTCAGCGGGG TCCGCAGCGG CCGTGGAACC TCCGCACCCG 
    CCGCTCCGCC ACGGCCGCGC CGCGTCCGGA GGGATCGGAC GACGCGGCCG 
    ATGCCGCGCC GGATCGAGCG CCATCGCCGC TGGCGGCGAC CAAGAAGCGG 
    GTGTTCTCCA TCGTGCTGTC CAAGGAGGAG ATCGGCCAGG ACTTCAAGGC 
    GATCCGCGGG ACTCGCCCCC CGCGCCGGCC CAAGAAGCGC CCCCGCACCG 
    TGCAACGCCA GCTCGACTTG CTGTACCCTG GATTGTGCCT AGCGGACCTG 
    ACGCCGGAGA CATACAAGAT TGAAGAGAGG TGATTGGTGT TATTTGTGAA 
    AGCTCCAATG GGAGGGGATT TTCAGATTTT CTGATATCTT TTCTCTTCAG 
    ATGTTCTGAT CGTTTTCCTT TTGTTATGTG ATCATGGGCT AACAAGGTTG 
    CTTCAGAACC GTAATGTTCT GGACGGGTTA GGGGAAGTTT AGTTGGGAAT 
    CTCCTCTAAT TATGTATTGG ATGTGGTTGT TGAGGAGTTT AGGTTGTGGA 
    AATTGATTAT TGGGCTTGTA GGATTGTTAA TTGTATAAAG TGTAATCATC 
    TGTACATTGT ACTATTAATC TATGAAGAAT TTTCGTT

    Gene models with high sequence identity

    1. AT1G48770.1 [+] show detail - Protein of unknown function (DUF1639)
      E-value: 3e-07; Score: 53.10

     

    InterPro Scan Digest

    See the detailed result >

    AT1G48770.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF1639)
    Computational Description
    Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G18295.1); Has 271 Blast hits to 266 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR