K19051

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19051

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19051

Determination of introduced cDNA(s)

  • J023068C08 - Rice Full-length cDNAs - Original: J023068C08

    full reading [+] show sequence

    Nucleotide sequence: J023068C08 - full reading 
    GGGGCGAAGA GGAGGACGCC ACGAGATCTG CAGCGAGAGA GAGCCAGCGA 
    AGCGCGACTC CGTTTTAACC GCCTTCGCCG CCGCCGCCGC GATATCGATC 
    CCCTCCCTCT CGCCGTCGAC GCCGTCGGCA TCCATGGCGC CAGGGCTCTA 
    CACCGACATC GGCAAGAAGA CCAGAGATCT GCTTTACAGG GACTACGGGA 
    CGCACCACAA GTTCACCCTC ACCACCTGCA CCCCCGAGGG CGTCACTATC 
    ACAGCTGCAG GAACAAGGAA AAATGAGTCT GTCTTTGGTG AGCTCCAAAC 
    CCAGCTTAAG AACAAGAAAT TGACTGTTGA TGTCAAAGCA AACTCAGAGT 
    CCGATCTTTT AACAACAGTC ACGGTTGATG AGTTTGGAAC TCCAGGGTTG 
    AAATCAATTC TTAGTTTGGT AGTTCCAGAC CAGAGGTCAG GGAAGCTTGA 
    ACTCCAGTAC CTTCATGAAT ATGCTGGCAT CAATGCAAGT GTTGGCCTGA 
    ATTCCAATCC TATGGTTAAC CTTTCTGGTG TCTTTGGAAG CAAAGAGCTC 
    TCAGTTGGTG TTGATGTTGC ATTCGACACT GCGACTAGCA ATTTCACCAA 
    GTACAATGCT GCATTGAGTC TAACCAATTC AGACCTTATT GCTTCTCTGC 
    ATCTGAACAA TCATGGTGAT ACCTTGATTG CATCCTACTA CCACCTGGTA 
    AAGCACCATT CGAACACTGC CGTAGGAGCT GAGCTGTCCC ACAGCTTCTC 
    AAGGAATGAG AGCACACTGA TCTTTGGGTC CCAGCACTCA TTGGACCCTC 
    ACACGACAGT GAAGGCTCGC TTCAACAACT ATGGCATGGC CAGCGCGCTC 
    GTCCAGCATG AATGGCGTCC CAAATCGCTA ATCACCATCT CTGGTGAGGT 
    TGACACCAAG GCAATTGAGA AGAGCACGAA AGTTGGCTTG TCCTTGGTGC 
    TCAAGCATTG AGTATGTTTT GCATCCTAGG AATTTTTCTT CAGTTCTTGT 
    GGATTGGAAT AACATGGAAA AAACATGGCC ACAGCTACCA TTGTGGCTTC 
    ATTTTGATCT TGAGTTCTTT CCCCACCATT ACCCTAGGCA AACATTAGCA 
    TTGGCTATAT ATTTTTATCC TCGGCGCCTG TTGTTAATAA TTTTGGGTGA 
    TTTGAGACCT ATTGCTGAAT ACTGTCAAAT ATGATGGAGA TATCTCTGTG 
    TTCCACATCT TTGTTG

    Gene models with high sequence identity

    1. AT3G01280.1 [+] show detail - voltage dependent anion channel 1
      E-value: 6e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Porin, eukaryotic type 0
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 6.5e-184
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 6.5e-184
    HMMPfam Porin, eukaryotic type 5.7e-65

    See the detailed result >

    AT3G01280.1

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 1
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 1 (VDAC1); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 3 (TAIR:AT5G15090.2); Has 888 Blast hits to 888 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 413; Fungi - 146; Plants - 300; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR