K19216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19216

Determination of introduced cDNA(s)

  • J013082L02 - Rice Full-length cDNAs - Original: J013082L02

    full reading [+] show sequence

    Nucleotide sequence: J013082L02 - full reading 
    GGACTGCACA CGTCGCCTCG CCTCGTCTGC GTCTGCGTCT GCGTCTGCGT 
    CTCCGTCTCC AACCCAGGCG GCGTAGGGGA AGGAGAAGGA AGGAGAGATC 
    GCGCGGCGCG CTGGCTGTCG CTGTCGCCGT CGCGCAGGCT CGTCCACCTC 
    GCGAAATCGT GAGCTCGCGC GCCGCTCCGG GCATGCAGGG CGCCACGCCG 
    GGCGATGCCG CTGGAGAGGA GGTGGGAGGC GGCGGGGACG TGGTGATGGT 
    GAGGCGGGCG AGCGTGGCGG CGTGCCTGAC CTGCCCGCTC TGCGGCCGCC 
    TCCTCCGCGA CGCCACCACC ATCTCCGAGT GCCTCCACAC CTTCTGCAGA 
    AAGTGTATAC ATGAGGAGTT CGTCGATAAG GAGTCCTGCT GCTGCCCTAC 
    TTGCAACATT GATCTGGGGT GTGCTCCGTT GGAGAAACTC AGAGTTGATC 
    ACAGTATGCA ATTCGTAAGG TCAAGGATAT TTCCTTTCAA ACGAAGGAAG 
    GTTGAGAACC CAGAAATCAT TTGTCCAGTT GCGTCACCTG TCAAGAGGAA 
    AGAAAGATCA CTATCTTCAC TTACAATCCC TGCTCCTCAG GTGTCTATAC 
    AGAAATGTTT GACAAAGAGG AGAACGAAAG CTTCGTGCTT ACGCAACTTT 
    CCTTTGCATT CTACCTCGAG GGGCAGTAAA GATACATCAA AGAAACTTGG 
    GGGTTGGAGA CCATTGGGTT GTCAACTTAA GCTTGGCAAA GACAAAAAAT 
    CTCTCAAATC AAGTGTAAAA GATACAAACA GAACCAAAAG TAAGTCTGGT 
    GATACAGATG ATGGTGCTCC TGCTAGTAAA GCAAAGGCTA GAGAACCCTT 
    TACAAGATAT GGGCGTGCAG CTAAGAGGAC TGGAAGAAAG AAATTGTTCA 
    TGTTGAAGAA CAAAAAGAAA AGGTTCAAGG CAAAGCAGCC CAGTAAAAAG 
    AGGAGATTCC GAGCACTATG GTTTTATCTA CTTGCTGCTT TTGACCAGAG 
    AGGAGTACCA ACTTTACCAC AACTACCAGC AAAGTATTTG AGGATCAAGG 
    ATGTTGATTT GCCTGCTTCT ATTATACAGA AGTACCTTGC ACAGAAACTT 
    AACCTCTCAA GTGAAACTGA GGTAGAAGTG TTGTGTGGTG GCAAAGTAGT 
    GAACCAAGGG ATGACACTGC ATGATCTAGT AGATTGCTGG CTTGAGAAAG 
    GACCAAAGAG CCGAATGCGC TCATCGGTAG GCTCCCCGGC CACTGGATTC 
    ATGGTGACAT TGTTCTATAG AAGGCCAGAT GTGGATGTGT CCTCATCCCC 
    AGCTCCACCC CAACCTGACA CTGAAAGTTG CCATAGCTGA TGCAGAGCTT 
    TGCTTCGTTT CTGAACCATC TGTGATTGGC TTCACTCATT GGGCTGTCAG 
    CCCTTGATTG ATCTGCGAAT CGGTTCCAAT TTGTGTGAGG CTCAAGCCAC 
    ACCAATTCAC TAATATGTAG ATAAATGCTA CTAATTTTAC AAGCCATGTT 
    GGGCTTCTGA TCATCTACCT TCTTCAACCA TTATTTTCCT TTTTTTTCTC 
    TTCAACCATT GTACCTAGGT ATGTGATCTG TAATGAGATG TTAATCGTTA 
    AGTATCAGTT GTTAGAGCT

    Gene models with high sequence identity

    1. AT2G30580.1 [+] show detail - DREB2A-interacting protein 2
      E-value: 6e-61; Score: 232.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, RING-type, conserved site 0
    HMMPanther RING FINGER PROTEIN 2e-43
    HMMPanther RING FINGER PROTEIN 2e-43
    Gene3D no description 0.00024
    ProfileScan Zinc finger, RING-type 11.368
    superfamily RING/U-box 6.7e-11

    See the detailed result >

    AT2G30580.1

    Model type
    Protein coding
    Short Description
    DREB2A-interacting protein 2
    Curator Summary
    Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance.
    Computational Description
    DREB2A-interacting protein 2 (DRIP2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: DREB2A-interacting protein 1 (TAIR:AT1G06770.1); Has 1631 Blast hits to 1626 proteins in 163 species: Archae - 0; Bacteria - 2; Metazoa - 1227; Fungi - 58; Plants - 232; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR