K19818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19818

Determination of introduced cDNA(s)

  • J033029F08 - Rice Full-length cDNAs - Original: J033029F08

    full reading [+] show sequence

    Nucleotide sequence: J033029F08 - full reading 
    GGTAGGTCCG GAGGAGGAAG CGGCGAGAGA AGCTCAGCTA GGCAGGGCGA 
    CGGGCAGAAA CGCGACCACG GCAACAAACC CCGCCGCGCG CGCCCACCGT 
    GCCGGTTACA TGGGAGTAGA GGCGGGCGGC GGCTGCGGTG GGAGGGCGGT 
    AGTCACCGGA TTCTACGTCT GGGGCTGGGA GTTCCTCACC GCCCTCCTGC 
    TCTTCTCGGC CACCACCTCC TACTAGCTAT ACACACCCAT CTCACCATAA 
    CACACATACA TAGATAGATA GATAGATAGA TACATACACA CAAACATAAG 
    TAGCTAGGTA GAGAAAGAGA TCATAGCGTT AGGTGATCGA TCGATGGCTG 
    CTGCTGAGGC GGCGGCGGCG GTGGGGAAGC AGCAGCAGAA GGGCGGCGGG 
    GGAAGGGGAG GAGGCGGCGG TGGGCCGGCG CCGTTCCTGA CGAAGACGAA 
    CCAGATGGTG GAGGAGAGCG CGACGGACGA GGTGATCTCG TGGGGAAGGG 
    AGGGGCGGTC GTTCGTGGTG TGGAAGCCGG TGGAGTTCGC CCGCGACCTC 
    CTCCCGCTCC ACTTCAAGCA CTGCAACTTC TCCTCCTTCG TCCGCCAGCT 
    CAACACCTAC GGTTTCCGGA GGGTGGTGCC CGATCGGTGG GAGTTCGCCA 
    ACGGCAACTT CCGGCGAGGA GAGCAAGGCC TCCTCTCCGG CATCCGCCGC 
    CGCAAGGCGA CGACGCCTCA GTCCTCCAAA TCCTGCGGCA GCGGCGTCAA 
    CGTCGCGTTC CCTCCGCCGC TGCCCCCTCT GCCCCCGGAG CCGTCGGCGA 
    CCACGTCCAG CGGCAACGAC CGCAGCTCCT CCTCCGCGTC CTCGCCGCCG 
    CGGGCGGACA TCACCAGCGA GAACGAGCAG CTCAGGAAGG ACAACCAAAC 
    GCTGACGATG GAGCTGGCGC GGGCTCGGCG GCACTGCGAG GAGCTTCTGG 
    GCTTCCTGTC GCGCTTCCTC GACGTCCGGC AGCTCGATCT CCGGCTGCTC 
    ATGCAGGAAG ACATGCGAGC GGCGGCCGGC GGCGTCGGCG GCGAGCAGCG 
    CGTGCAAGAG CACGCCCGGG AGGAGAAGTG CGTGGAGCTG TTCGGCGTGC 
    TCCTCGACGA CACCCATGGC GCCGCCACGA GGAAGAGGGC GCGGTGCGAG 
    GAGGCGGCTG CCAGCGAGCG GCCGATCAAG ATGATCAGGA TCGGCGAGCC 
    GTGGGTCAGC GTTCCATCGT CGGGGCCGGC GCGGTGTGGC GGCGACAACT 
    GAAGTCCAAA CTTGTGCATG CCACGGCCAT GACCTGATCG ACCAGGCGAA 
    CGGCAAGCAG AAGGCATGCA TGGTGAGGTT GGTGGCAAGA ATGGTCCGAT 
    CAACCAAGTC ATTAGGTAAA ACGAGACGAA TTAAGCACGC CAAATACGTG 
    CGGCCCTGTG TTAATCACGG GTTGCTACCA TGCTAGTAGT AAGGTAGGAA 
    CAGTACGAGG AGTCAAGGCT GACCGAAGCG AAGCAGCCGG CTCTTGTGTC 
    TGGACGTTGT TTCAGTTAAC ACTGAAAGCT TCACCTTACT ATGGATTATA 
    CATTTTTTAG ATAATGG

    Gene models with high sequence identity

    1. AT4G36990.1 [+] show detail - heat shock factor 4
      E-value: 5e-39; Score: 159.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 2.8e-16
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 2.8e-16
    FPrintScan Heat shock factor (HSF)-type, DNA-binding 2.8e-16
    superfamily "Winged helix" DNA-binding domain 7.2e-35
    Coil coiled-coil 0
    HMMPfam Heat shock factor (HSF)-type, DNA-binding 2.7e-29
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 1.5e-33
    HMMSmart Heat shock factor (HSF)-type, DNA-binding 7.4e-51
    HMMPanther HEAT SHOCK TRANSCRIPTION FACTOR (HSF)-RELATED 1.9e-55
    HMMPanther HEAT SHOCK TRANSCRIPTION FACTOR 1.9e-55

    See the detailed result >

    AT4G36990.1

    Model type
    Protein coding
    Short Description
    heat shock factor 4
    Curator Summary
    encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins.
    Computational Description
    heat shock factor 4 (HSF4); FUNCTIONS IN: transcription repressor activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cyclopentenone, response to heat; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor B2A (TAIR:AT5G62020.1); Has 2101 Blast hits to 2087 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 340; Fungi - 475; Plants - 774; Viruses - 0; Other Eukaryotes - 510 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR