K19833

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19833

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19833

Determination of introduced cDNA(s)

  • J033143G16 - Rice Full-length cDNAs - Original: J033143G16

    full reading [+] show sequence

    Nucleotide sequence: J033143G16 - full reading 
    GCTCTCTTTC TCTCCTCCCA CTCCGCTAGC TCCGGCCACC AACTTTGACC 
    CGTCCTCCTC CTCCGCATCC CCCATCCCCT CCTCCCCGGC GGCGGCGGCG 
    GCGCGGAGGC GGCGGCACGG GAGCGGCTAG TGGTTTCGTC GGCGGAGGCG 
    GAGGCGGGGC CAAGATGTTC GGGCGCGCGC CGAAGAAGAG CGACAACACC 
    AAGTACTACG AGATCCTGGG GGTCCCCAAG ACCGCCTCCC AGGACGACCT 
    CAAGAAGGCG TACCGCAAGG CCGCCATCAA GAACCACCCC GACAAGGGCG 
    GCGACCCCGA GAAGTTCAAG GAGCTTGCAC AAGCTTATGA GGTATTGAGT 
    GACCCGGAGA AACGTGAAAT CTATGACCAA TATGGTGAAG ATGCCCTCAA 
    GGAAGGAATG GGTGGAGGCG GATCCCATGT TGATCCATTT GACATCTTTT 
    CATCATTCTT TGGACCTTCT TTTGGTGGTG GTGGCAGCAG CAGGGGCAGA 
    AGGCAAAGGA GGGGAGAGGA TGTGATCCAT CCGCTTAAGG TTTCTCTAGA 
    AGATCTTTAC AATGGTACTT CAAAGAAGCT CTCTCTTTCC CGCAATGTCC 
    TCTGCGCCAA GTGCAAGGGC AAGGGTTCCA AGTCTGGTGC TTCCATGAGG 
    TGCCCAGGTT GCCAGGGGTC TGGCATGAAA ATCACCATCC GCCAGCTGGG 
    GCCTTCCATG ATACAGCAGA TGCAGCAGCC TTGCAATGAG TGTAAGGGGA 
    CTGGAGAGAG CATTAATGAG AAGGATCGCT GCCCAGGCTG CAAGGGCGAG 
    AAGGTTATTC AGGAGAAGAA GGTTCTGGAG GTTCACGTTG AGAAGGGGAT 
    GCAACACAAT CAGAAGATCA CTTTCCCTGG TGAAGCTGAT GAGGCGCCTG 
    ATACCGTTAC GGG

    Gene models with high sequence identity

    1. AT3G44110.2 [+] show detail - DNAJ homologue 3
      E-value: 3e-100; Score: 361.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Heat shock protein DnaJ, conserved site 0
    HMMSmart Heat shock protein DnaJ, N-terminal 3.4e-28
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    FPrintScan Heat shock protein DnaJ 1.7e-46
    ProfileScan Heat shock protein DnaJ, N-terminal 23.644
    ProfileScan Heat shock protein DnaJ, cysteine-rich domain 24.785
    HMMPfam Heat shock protein DnaJ, N-terminal 5.9e-26
    HMMPfam Heat shock protein DnaJ, cysteine-rich domain 6.9e-19
    Gene3D Heat shock protein DnaJ, N-terminal 1.8e-23
    Gene3D no description 1.1e-18
    superfamily Heat shock protein DnaJ, N-terminal 5.9e-37
    superfamily Heat shock protein DnaJ, cysteine-rich domain 4.5e-19
    superfamily HSP40/DnaJ peptide-binding 1.1e-11
    HMMPanther HSP40, SUBFAMILY A, MEMBERS 1,2,4 7.5e-136
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 7.5e-136

    See the detailed result >

    AT3G44110.2

    Model type
    Protein coding
    Short Description
    DNAJ homologue 3
    Curator Summary
    homologous to the co-chaperon DNAJ protein from E coli
    Computational Description
    DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26521 Blast hits to 26345 proteins in 3465 species: Archae - 213; Bacteria - 10015; Metazoa - 4280; Fungi - 2432; Plants - 2547; Viruses - 88; Other Eukaryotes - 6946 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR