K19909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19909

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19909

Determination of introduced cDNA(s)

  • J023007B15 - Rice Full-length cDNAs - Original: J023007B15

    full reading [+] show sequence

    Nucleotide sequence: J023007B15 - full reading 
    GATCTCATCT CAAGAAGAAA AATAATTAAT TACTCGCAGC AAAGGACGGA 
    CAGTTTCCTG CGCAAATTCC ACGTTCCACC TTCCTCTTCG GTCGTCTCCG 
    CCGGCTTGGA GTTGGGAGAA GAAGCTCAAA CGCGGAGGCC ACCACGACCA 
    CCACAACACC ACCACCTCTT CTCCTAGTCA AACCCACCCT TCCCTTGTAA 
    TCTTCGCAAC AACAGCAGGA CGGCAAGTTC GTAGCTTTCC CCTCCGCTTT 
    ATACACCCGC ATCTCCAAAT CTGAGGAGTG AGGGGAGAAG ATAAAGAAAG 
    AAAAGCGCGC ATTTTGGTGT CCGGGGAAGG GAAAAGGGCG GTTCTTGGCG 
    TCGGTGGCGG GTTTTGTTTT TTGGGGGTGG AAGCGGTTGG TTTGGGGATG 
    AGCAGCGGCC AGGAAGCCGG ATCGAGCTCC GGTGGATCCG GCGATGGCGG 
    CGCGGCGGCG CCCAGGAGGA ACACCAGGAA GCCCAAGTAT TCCAAGTTTA 
    CTCAGCAGGA GCTCCCAGCT TGCAAGCCGA TTCTTACTCC AAAATGGGTC 
    ATTTCAGTTT TCGTTCTTGT CGGAGTCATT TTTGTCCCAA TCGGGCTTGT 
    TTCGTTGAAG GCTTCACGAA AGGTTGTTGA GATAGTTGAT CGATACGATG 
    ATGCATGTGT CCCAGCTAAT ACAACTGACA AGCTTGCTTA CATCCAGAAC 
    CCAACAATAA GCAAAAACTG CAGAAGGACT CTTAAGGTTC CAAAGGATAT 
    GGATGCACCA ATCTTTGTGT ATTACCAGCT GGATAACTTT TATCAGAATC 
    ATAGGAGATA TGTCAAGAGC CGGAGTGATG CACAGCTAAG AGATCCCAAA 
    AAGGCAAATG ACACCTCCAC TTGTGATCCC GAGGGTACAG CAAATGGAAT 
    GGCAATTGTT CCTTGTGGTC TGATTGCATG GAGCATATTC AATGATACAT 
    ATGGCTTTGT TCGCAACAGT AAGAACCTGC CAGTGGACAA GAAAAACATC 
    TCTTGGAAGA GTGACAGGGA GCACAAATTT GGACGTGATG TCTTTCCAAA 
    GAACTTCCAG AATGGTTCTC TTATAGGTGG AAAAACACTT GATCCAAATA 
    AATCGTTGAG TAAACAAGAA GACCTTATTG TTTGGATGAG AACTGCTGCA 
    CTTCCAACAT TCAGAAAGCT GTATGGTAGG ATACACACTG ACCTCAAGAA 
    AGGTGACACC ATTACGGTGA CATTGGAGAA CAACTACAAC ACATATAGCT 
    TTAGTGGCAA AAAGAAGTTG GTACTTTCTA CCTCGACATG GCTCGGTGGA 
    AAGAATGATT TTCTTGGTCT AGCATATCTC AGTGTTGGTG GACTCTGCTT 
    CTTCCTGGCA TTTGCATTCA CCTTGCTGTA CTTGATAAAA CCAAGGAAAA 
    TGGGTGACAA CAACTACTTG TCATGAAACA GAAACCCTGC AGGCCGTTAA 
    TAAGCTCTTC AAACTTTTAA GTTGCAAATT CAACATGAAG CAAGTTGGAT 
    TATGGATTCA AATGTATCTT GTACTAGATA GCGGTTTTAT TTGTTAGCCG 
    TGCTGGAGTG CCAATACGGC TTATACCAAT TAGGGCAGCG TTTATGAGCA 
    ACACTGATGT ACATTATGTT GCAAAGAAAA ATATATATAT ATACAGCCTT 
    CTTTTGTTGA AAATTTTAAA TATCCCAGAA GTTAAATGGA ATGATTTTTA 
    TATTGTT

    Gene models with high sequence identity

    1. AT3G12740.1 [+] show detail - ALA-interacting subunit 1
      E-value: 4e-129; Score: 458.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Protein of unknown function DUF284, transmembrane eukaryotic 8.4e-210
    HMMPfam Protein of unknown function DUF284, transmembrane eukaryotic 5.9e-93
    HMMPanther Protein of unknown function DUF284, transmembrane eukaryotic 4.9e-142

    See the detailed result >

    AT3G12740.1

    Model type
    Protein coding
    Short Description
    ALA-interacting subunit 1
    Curator Summary
    Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.
    Computational Description
    ALA-interacting subunit 1 (ALIS1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (TAIR:AT1G54320.1); Has 864 Blast hits to 864 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 160; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR