K19920

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19920

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K19920

Determination of introduced cDNA(s)

  • J023044N16 - Rice Full-length cDNAs - Original: J023044N16

    full reading [+] show sequence

    Nucleotide sequence: J023044N16 - full reading 
    GTCCGCTCCA GGCTCCAGCC GAGTACCCGC CTCCTCCTCC TCGCTCGCCG 
    CGGAATCTTC TGGAAGCTTC TAGATCCGGC CGCTACGATC GGCGAAGAAG 
    GGATGGGGCA GGCCTTCCGC AAGCTCTTCG ACGCCTTCTT CGGCAACAAG 
    GAGATGCGGG TGGTGATGCT TGGGCTAGAT GCCGCGGGGA AGACCACCAT 
    ACTCTATAAG CTGCACATCG GCGAAGTTCT CTCCACCGTC CCCACTATAG 
    GCTTCAACGT GGAGAAAGTT CAATACAAGA ATGTGGTGTT CACTGTGTGG 
    GATGTTGGTG GCCAGGAAAA ATTGAGGCCC TTATGGAGGC ACTACTTCAA 
    CAACACCGAT GCTCTGATCT ACGTAGTTGA TTCCCTGGAT AGAGAGAGGA 
    TTGGGAGAGC CAGAGCTGAA TTTCAGGCCA TTATTAATGA CCCTTTTATG 
    CTTAATAGTG TTCTATTGGT GTTTGCTAAC AAGCAAGACA TGAGGGGCGC 
    AATGACTCCG ATGGAAGTAT GCGAGGGCCT TGGTCTATAT GACCTGAACA 
    ACCGTATATG GCATATCCAA GGAACCTGTG CTCTCAAAGG CGATGGCCTC 
    TATGAAGGAT TGGACTGGTT AGCAACAACT CTGGATGAGA TGCGAGCTTC 
    AGGGCGGATA ACTTCAACAT CATCGTCATG AAGAATAACA AGGGATAGTT 
    GATCCTTGCG CTATGTGGAT TGACTTGATG CCTGCATCTT GCTTTCTTTT 
    CCATTTGATT TCCTCCTCTC CTGTTGTAGC TATTGGTCGT GAACTGGGCG 
    AGGCTTTTTA GTAAAGCTTT GATTCAGGCA AAACTGTAGT GTTACGAAAG 
    ACAGGTGACA GTGATGCACT TGCACTTGGG AGGAGTGGTT GGTTTACTTA 
    CTGAAAGTTC ATCTTTTCGT GGAAGCGGGA GTGGTTGTAA ATATATGAAG 
    CTGCTACTGT ACTGATATAA TTGTGGTTGC TCTTGAACCA GTTGTATTCG 
    TGAATTTTCA GATTCG

    Gene models with high sequence identity

    1. AT5G17060.1 [+] show detail - ADP-ribosylation factor B1B
      E-value: 8e-93; Score: 337.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ADP-RIBOSYLATION FACTOR, ARF 1.3e-125
    HMMPanther ARF/SAR superfamily 1.3e-125
    HMMSmart ADP-ribosylation factor 1.7e-97
    HMMSmart Small GTPase SAR1-type 4.8e-18
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-51
    HMMTigr Small GTP-binding protein 7e-18
    ProfileScan ARF 22.184
    HMMPfam ARF/SAR superfamily 1.4e-69
    FPrintScan ARF/SAR superfamily 9.8e-17
    FPrintScan ARF/SAR superfamily 9.8e-17
    FPrintScan ARF/SAR superfamily 9.8e-17
    FPrintScan ARF/SAR superfamily 9.8e-17
    Gene3D no description 1.5e-60

    See the detailed result >

    AT5G17060.1

    Model type
    Protein coding
    Short Description
    ADP-ribosylation factor B1B
    Curator Summary
    A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster), other ARFs and ARF-like proteins.
    Computational Description
    ADP-ribosylation factor B1B (ARFB1B); FUNCTIONS IN: GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor B1C (TAIR:AT3G03120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR