K20012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20012

Determination of introduced cDNA(s)

  • J033030G12 - Rice Full-length cDNAs - Original: J033030G12

    full reading [+] show sequence

    Nucleotide sequence: J033030G12 - full reading 
    GAGAGGTGAG GTGGCACGCG TGAGAGTGAG GAGCTCGCGA ACTCCAAAAC 
    CCTAACCCTC TCGGAGCTTC ACATCGGCGG CGGCGGCGGC GATGGCGGAG 
    GGTGGCGGCG GAGGAGGAGG GTCGGCGGCG TCGGCGGCGC TGAAGGATCA 
    GGGGAACGAG CAGTTCAAGG CGGGGAACTA CCTCAAGGCC GCCGCGCTCT 
    ACACCCAGGC CATCAAGCTC GACCCCGACA ACCCCACCCT CTATAGCAAT 
    CGGGCTGCTG CATTTCTCCA TCTAGTTAAG CTTAATAAGG CACTCGCTGA 
    TGCTGATACG ACAATAAAAC TCAAGCCACA ATGGGAAAAG GGTCATTTCA 
    GGAAAGGGTG TGTTTTAGAG TCGATGGAAC ACTATGAGGA GGCAATATCT 
    TCTTTTCAGA TAGCTTTGCA ACACAATCCA CAAAATACAG AAGTTTCAAG 
    AAAAATTAAG AGGCTTACTC AGTTGGCAAG GGAAAAGAAG CGGGCTCTTG 
    ATGTGGAGAA CATGCGTTCT AATGTTGATG TTGCAAAGAA CTTGGATTCA 
    CTGAAAACCG AGCTGGCTGG AAAATATGGA GATGCCGAAC TGGGGCAAAG 
    TATCTTCACT TTTGTTGTTA ATGTGATTGA ATCAGCTATA AAGGTCTGGC 
    ATGACACCGG AAAAGTAGAT GCAAGAGTTA ATTTTCTTCT TGATGACCAG 
    AAGACTGATA CTGAAAAACA TGCCCCAGTG GTTAACATTG ACAAGGCCTT 
    TGACTCACCC CACACTCACA GCAGTTGCTT CACATTTTTG CGGCAATATT 
    CCGAGGAGTC TTTCTCAAAG GCTGCTTGTA TGGTAGCACC TAAGAGCGCC 
    ATCTCGTACC CTCAGGTCTG GAAAGGACAG GGATCAAGAA AATGGAAGCT 
    TGACCAGAGT GATGGTTTCT TTGTGCAATT TGAGTCACCA ATTCTGCGGA 
    AGATATGGTT TGTCCCTAGC ACAACTGAAA AGGGACGAGT ATTATGCAGG 
    AGTCCTGAGC TCCTGGACAT TAGCATCCAC GAAGTGCTTC CCCGTATATT 
    CAAAGAAACG GCTTGAATAA ACAACAAATG GACAGTGAAT GGCTCCCAAA 
    TTCTTCCCCT GTTGTGGTCA TATTCTTTCC TAGCTTACAG TTGCAAAGGG 
    GATATTTTTC ATAGCGTGGT GAGAGCTTAG ATTTGCATGC CAGATTTTGT 
    AAGCTGTTGA TCTGTATTGT ACACCGAGGC ACACAAATTT TGCTGATCTG 
    GTTTTTTAAT TATATATGCC TTAAGTGGTG CAATTTCCAT TGT

    Gene models with high sequence identity

    1. AT1G04190.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 3e-129; Score: 458.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Tetratricopeptide repeat 0.00013
    HMMSmart Tetratricopeptide repeat 7.3
    HMMSmart Tetratricopeptide repeat 0.00026
    Gene3D Tetratricopeptide-like helical 8.7e-34
    ProfileScan Tetratricopeptide repeat 10.65
    ProfileScan Tetratricopeptide repeat 6.077
    ProfileScan Tetratricopeptide repeat 9.529
    ProfileScan Tetratricopeptide repeat-containing 22.971
    HMMPfam Tetratricopeptide TPR-1 6.2e-06
    HMMPfam Tetratricopeptide TPR-1 9.5e-06
    superfamily TPR-like 2.3e-29
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN 3 (TPR REPEA 9.4e-97
    HMMPanther TPR REPEAT CONTAINING PROTEIN 9.4e-97

    See the detailed result >

    AT1G04190.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 20389 Blast hits to 12924 proteins in 1156 species: Archae - 970; Bacteria - 7001; Metazoa - 4309; Fungi - 1260; Plants - 1634; Viruses - 0; Other Eukaryotes - 5215 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR