K20135

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20135

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20135

Determination of introduced cDNA(s)

  • J013000J10 - Rice Full-length cDNAs - Original: J013000J10

    full reading [+] show sequence

    Nucleotide sequence: J013000J10 - full reading 
    GGGTCTCCAC TGCGCCACGC TGCTGCCGAC CACCCGCACC ATCGATGGCC 
    AGGCGCGGCC GCCGCTCCCT TGCTTCGCCC GCCGTTGCCA TCGCCCTTTT 
    CGTCTTCCTC GCCTACGGCG GCGGCGGCGG CGGCGGCGGA GTATGCGAGG 
    CCGCGCCGGC GAGCGCGGTC GTGAAGAGCG TCCCGGGATT CGACGGCGCC 
    CTCCCGTCGA AGCACTACGC CGGGTACGTG ACGGTGGAGG AGCAGCACGG 
    GCGGAACCTG TTCTACTACC TGGTGGAGTC GGAGCGCGAC CCGGCGAAGG 
    ACCCCCTCGT GCTCTGGCTC AACGGCGGCC CCGGCTGCTC CAGCTTCGAC 
    GGCTTCGTCT ACGAGCACGG ACCATTCAAT TTCGAGTCAG GAGGGTCAGC 
    CAAGAGCCTA CCGAAGCTTC ATCTCAATCC CTATAGCTGG TCCAAGGTAT 
    CCAGTGTGAT CTACTTGGAT TCCCCTGCTG GTGTGGGGCT GTCATACTCC 
    AAGAATACTT CGGATTATAA CACCGGGGAC CTCAAGACCG CCGCGGATTC 
    GCATACTTTT CTTCTGAAGT GGTTTCAGCT GTACCCTGAG TTCCTGAGCA 
    ATCCATTTTA CATAGCTGGG GAGTCGTATG CTGGGGTTTA TGTTCCTACT 
    CTTTCGCATG AAGTTGTCAA AGGATTACAT GATGGAGTGA AGCCTACAAT 
    AAACTTCAAG GGCTACATGG TCGGAAATGG TGTTTGCGAC ACTGTTTTTG 
    ATGGTAATGC TCTTGTGCCA TTTGCTCATG GAATGGCTCT AATTTCAGAC 
    GGTATATACC AGGAAGCTCA GACTGCATGC CACGGAAACT ACTGGAATAC 
    TACCACTGAT AAATGTGAAA ATGCACTCTA CAAAGTCGAT ACGTCAATTA 
    ATGACCTAAA TATTTATGAC ATTCTTGAGC CATGCTACCA CAGCAAAACT 
    ATCAAGAAAG TGACCCCAGC AAATACCAAA TTGCCCAAAA GTTTCCAACA 
    TCTTGGTACA ACTACCAAGC CCCTTGCTGT AAGAACAAGA ATGCATGGGC 
    GTGCTTGGCC TCTGAGAGCT CCTGTGAGAG CGGGGCGTGT GCCATCCTGG 
    CAGGAGTTTG CCAGAGGATC TCGCCCCAGT GGAGTTCCTT GTATGAGTGA 
    TGAAGTTGCA ACAGCATGGC TGAACAACGA TGACGTCAGA GCAGCAATTC 
    ATGCCCAACC AGTAAGCTCA ATTGGCTCGT GGCTTATATG CACCAACGTG 
    TTGGATTTCA TCCATGATGC TGGAAGTATG ATCAGTTATC ACAAGAACCT 
    CACAGGCCAG GGTTATCGTG CTTTCATATA CAGTGGTGAT CATGATATGT 
    GTGTACCTTA TACCGGGACT GAAGCATGGA CCAGATCTTT GGGCTACGGA 
    GTTATTGATT CATGGAGACC GTGGCACCTG AATGGCCAAG TTTCTGGGTA 
    CACCCAAGGA TATGAACATG GCCTCACCTT TGCTACCATT AAGGGTGCTG 
    GGCACACTGT TCCTGAATAC AAACCACAAG AATCATTGGC TTTCTATAGC 
    CGCTGGCTTG CTGGTTCTAA ATTGTAAATG CTTGTGAATC CGACATCCAA 
    TAATGGGAAG CATACATATC CATACAGCCA TGAATCAGAT AAAGGTTGAT 
    ACAAAGATAA TATAAAAAAA CTACAAACCA ATTTAGAAAG CCACATTTAT 
    TTCAGAATAG TTGGTGCCAA CACCATGTTG TATGTTCTTT TATGCAAACA 
    GTAGATCATT CATCATTATT TGTGGAAGCT TACTGTGCTG TAACATC

    Gene models with high sequence identity

    1. AT4G12910.1 [+] show detail - serine carboxypeptidase-like 20
      E-value: 0; Score: 639.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    FPrintScan Peptidase S10, serine carboxypeptidase 1.9e-27
    FPrintScan Peptidase S10, serine carboxypeptidase 1.9e-27
    FPrintScan Peptidase S10, serine carboxypeptidase 1.9e-27
    FPrintScan Peptidase S10, serine carboxypeptidase 1.9e-27
    superfamily alpha/beta-Hydrolases 1.2e-135
    Gene3D no description 7.9e-133
    HMMPfam Peptidase S10, serine carboxypeptidase 9.5e-141
    HMMPanther SERINE CARBOXYPEPTIDASE I (PLANTS) 4.7e-257
    HMMPanther Peptidase S10, serine carboxypeptidase 4.7e-257

    See the detailed result >

    AT4G12910.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 20
    Computational Description
    serine carboxypeptidase-like 20 (scpl20); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 21 (TAIR:AT3G25420.1); Has 4118 Blast hits to 3857 proteins in 425 species: Archae - 0; Bacteria - 294; Metazoa - 699; Fungi - 932; Plants - 1620; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR